<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="236" inparalogs="614"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Korarchaeum cryptofilum " NCBITaxId="374847">
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        <gene id="254" protId="B1L4K2" geneId="Kcr_0628"/>
        <gene id="256" protId="B1L388" geneId="purA"/>
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        <gene id="586" protId="B1L6W2" geneId="Kcr_1445"/>
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        <gene id="604" protId="B1L6E5" geneId="Kcr_1278"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="K.cryptofilum" link="http://www.uniprot.org/taxonomy/374847"/>
    </notes>
  </species>
  <species name="Trypanosoma cruzi " NCBITaxId="5693">
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        <gene id="528" protId="K4E8N7" geneId="TCSYLVIO_001917"/>
        <gene id="529" protId="K4DT38" geneId="TCSYLVIO_007483"/>
        <gene id="530" protId="K4DXV1" geneId="TCSYLVIO_006192"/>
        <gene id="531" protId="K4DUY8" geneId="TCSYLVIO_007019"/>
        <gene id="532" protId="K4E6X3" geneId="TCSYLVIO_002533"/>
        <gene id="533" protId="K4E7I4" geneId="TCSYLVIO_002773"/>
        <gene id="534" protId="K4E207" geneId="TCSYLVIO_004302"/>
        <gene id="535" protId="K4E1U9" geneId="TCSYLVIO_004423"/>
        <gene id="536" protId="K4E0T2" geneId="TCSYLVIO_005149"/>
        <gene id="537" protId="K4DUM2" geneId="TCSYLVIO_006928"/>
        <gene id="538" protId="K4DP99" geneId="TCSYLVIO_009120"/>
        <gene id="539" protId="K4DS41" geneId="TCSYLVIO_007957"/>
        <gene id="540" protId="K4EAK0" geneId="TCSYLVIO_001197"/>
        <gene id="541" protId="K4DXA6" geneId="TCSYLVIO_005954"/>
        <gene id="542" protId="K4E6D0" geneId="TCSYLVIO_002755"/>
        <gene id="545" protId="K4DSQ7" geneId="TCSYLVIO_007606"/>
        <gene id="547" protId="K4E2I1" geneId="TCSYLVIO_004376"/>
        <gene id="549" protId="K4E3H7" geneId="TCSYLVIO_003734"/>
        <gene id="551" protId="K4DX17" geneId="TCSYLVIO_006039"/>
        <gene id="553" protId="K4EAQ0" geneId="TCSYLVIO_001380"/>
        <gene id="555" protId="K4ECB4" geneId="TCSYLVIO_000995"/>
        <gene id="557" protId="K4EBM1" geneId="TCSYLVIO_000968"/>
        <gene id="559" protId="K4DQ05" geneId="TCSYLVIO_008887"/>
        <gene id="560" protId="K4DU71" geneId="TCSYLVIO_007080"/>
        <gene id="562" protId="K4E2F7" geneId="TCSYLVIO_004230"/>
        <gene id="564" protId="K4E600" geneId="TCSYLVIO_003351"/>
        <gene id="566" protId="K4EAA2" geneId="TCSYLVIO_001534"/>
        <gene id="567" protId="K4DQH2" geneId="TCSYLVIO_008645"/>
        <gene id="568" protId="K4DR49" geneId="TCSYLVIO_008473"/>
        <gene id="569" protId="K4E3W2" geneId="TCSYLVIO_004063"/>
        <gene id="570" protId="K4DR93" geneId="TCSYLVIO_008180"/>
        <gene id="571" protId="K4DVH0" geneId="TCSYLVIO_007038"/>
        <gene id="572" protId="K4DXF6" geneId="TCSYLVIO_005988"/>
        <gene id="573" protId="K4E6G7" geneId="TCSYLVIO_002845"/>
        <gene id="574" protId="K4E0X1" geneId="TCSYLVIO_005112"/>
        <gene id="575" protId="K4DUW1" geneId="TCSYLVIO_007044"/>
        <gene id="578" protId="K4EAC3" geneId="TCSYLVIO_001729"/>
        <gene id="580" protId="K4DQX8" geneId="TCSYLVIO_008414"/>
        <gene id="581" protId="K4DQT8" geneId="TCSYLVIO_008413"/>
        <gene id="583" protId="K4DK37" geneId="TCSYLVIO_010564"/>
        <gene id="585" protId="K4DYJ1" geneId="TCSYLVIO_005969"/>
        <gene id="587" protId="K4DRN3" geneId="TCSYLVIO_008217"/>
        <gene id="589" protId="K4DKD0" geneId="TCSYLVIO_010369"/>
        <gene id="591" protId="K4DYG1" geneId="TCSYLVIO_005795"/>
        <gene id="594" protId="K4EAL6" geneId="TCSYLVIO_001410"/>
        <gene id="595" protId="K4E7I9" geneId="TCSYLVIO_002404"/>
        <gene id="596" protId="K4DZB5" geneId="TCSYLVIO_005460"/>
        <gene id="597" protId="K4E3X5" geneId="TCSYLVIO_004057"/>
        <gene id="598" protId="K4E5X3" geneId="TCSYLVIO_003001"/>
        <gene id="599" protId="K4DZW7" geneId="TCSYLVIO_005118"/>
        <gene id="600" protId="K4DZS8" geneId="TCSYLVIO_005158"/>
        <gene id="601" protId="K4EAE6" geneId="TCSYLVIO_001703"/>
        <gene id="603" protId="K4E2G4" geneId="TCSYLVIO_004094"/>
        <gene id="605" protId="K4E4X1" geneId="TCSYLVIO_003276"/>
        <gene id="607" protId="K4DRD1" geneId="TCSYLVIO_008224"/>
        <gene id="609" protId="K4E1F9" geneId="TCSYLVIO_004475"/>
        <gene id="612" protId="K4E585" geneId="TCSYLVIO_003143"/>
        <gene id="614" protId="K4E7L5" geneId="TCSYLVIO_002385"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.cruzi" link="http://www.uniprot.org/taxonomy/5693"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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