<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="330" inparalogs="1002"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Korarchaeum cryptofilum " NCBITaxId="374847">
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        <gene id="925" protId="B1L6Y2" geneId="Kcr_1465"/>
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        <gene id="950" protId="B1L6W4" geneId="eif2b"/>
        <gene id="952" protId="B1L787" geneId="rpl30p"/>
        <gene id="954" protId="B1L5I3" geneId="Kcr_0966"/>
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        <gene id="964" protId="B1L3M6" geneId="Kcr_0297"/>
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        <gene id="969" protId="B1L734" geneId="Kcr_1517"/>
        <gene id="971" protId="B1L3A8" geneId="Kcr_0177"/>
        <gene id="972" protId="B1L4I3" geneId="Kcr_0609"/>
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        <gene id="978" protId="B1L3R8" geneId="Kcr_0339"/>
        <gene id="980" protId="B1L4N5" geneId="Kcr_0662"/>
        <gene id="982" protId="B1L7Q7" geneId="rpoL"/>
        <gene id="984" protId="B1L440" geneId="Kcr_0466"/>
        <gene id="986" protId="B1L7K7" geneId="Kcr_0074"/>
        <gene id="988" protId="B1L4G6" geneId="Kcr_0592"/>
        <gene id="990" protId="B1L512" geneId="Kcr_0794"/>
        <gene id="992" protId="B1L6F6" geneId="Kcr_1289"/>
        <gene id="995" protId="B1L3J9" geneId="Kcr_0268"/>
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        <gene id="999" protId="B1L618" geneId="Kcr_1151"/>
        <gene id="1001" protId="B1L7N0" geneId="Kcr_0097"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="K.cryptofilum" link="http://www.uniprot.org/taxonomy/374847"/>
    </notes>
  </species>
  <species name="Naegleria gruberi " NCBITaxId="5762">
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    </database>
    <notes>
      <additionalInformation abbreviation="N.gruberi" link="http://www.uniprot.org/taxonomy/5762"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="bootstrap" value="1"/>
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