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  <notes>
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    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="T.hominis" link="http://www.uniprot.org/taxonomy/72359"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="3">
      <score id="bit" value="1083"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="4">
      <score id="bit" value="869"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="8">
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="6">
      <score id="bit" value="758"/>
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        <score id="bootstrap" value="0.99"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="732"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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