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        <gene id="463" protId="A8BZQ3" geneId="GL50803_115786"/>
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        <gene id="473" protId="A8B258" geneId="GL50803_14038"/>
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        <gene id="478" protId="A8BGE2" geneId="GL50803_9834"/>
        <gene id="480" protId="A8BNY3" geneId="GL50803_13896"/>
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        <gene id="484" protId="A8B3R0" geneId="GL50803_23888"/>
        <gene id="485" protId="A8BDV4" geneId="GL50803_6289"/>
        <gene id="486" protId="A8BT25" geneId="GL50803_9355"/>
        <gene id="487" protId="A8B368" geneId="GL50803_14289"/>
        <gene id="490" protId="A8B433" geneId="GL50803_6633"/>
        <gene id="493" protId="A8B713" geneId="GL50803_5919"/>
        <gene id="495" protId="A8B2U2" geneId="GL50803_11043"/>
        <gene id="498" protId="A8BKC6" geneId="GL50803_4652"/>
        <gene id="500" protId="A8BJN4" geneId="GL50803_1376"/>
        <gene id="502" protId="A8BZ27" geneId="GL50803_16760"/>
        <gene id="504" protId="A8BFN5" geneId="GL50803_12082"/>
        <gene id="506" protId="A8BE38" geneId="GL50803_14285"/>
        <gene id="509" protId="A8BD10" geneId="GL50803_4081"/>
        <gene id="511" protId="A8B5G3" geneId="GL50803_4059"/>
        <gene id="512" protId="A8B509" geneId="GL50803_20195"/>
        <gene id="514" protId="A8BAD7" geneId="GL50803_8707"/>
        <gene id="516" protId="A8BU63" geneId="GL50803_15380"/>
        <gene id="518" protId="E2RU33" geneId="GL50803_1345"/>
        <gene id="520" protId="A8B8X5" geneId="GL50803_8389"/>
        <gene id="521" protId="A8BIE4" geneId="GL50803_15368"/>
        <gene id="522" protId="A8BUC0" geneId="GL50803_16795"/>
        <gene id="523" protId="A8B7M3" geneId="GL50803_15469"/>
        <gene id="525" protId="A8B4L8" geneId="GL50803_89746"/>
        <gene id="526" protId="A8B801" geneId="GL50803_15313"/>
        <gene id="528" protId="A8BW22" geneId="GL50803_13672"/>
        <gene id="529" protId="A8BIC5" geneId="GL50803_92618"/>
        <gene id="531" protId="A8B5I7" geneId="GL50803_6483"/>
        <gene id="533" protId="A8BS96" geneId="GL50803_14699"/>
        <gene id="535" protId="E2RU83" geneId="GL50803_7878"/>
        <gene id="537" protId="A8BND8" geneId="GL50803_16612"/>
        <gene id="539" protId="A8BAA8" geneId="GL50803_4602"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="G.intestinalis" link="http://www.uniprot.org/taxonomy/184922"/>
    </notes>
  </species>
  <species name="Geobacter sulfurreducens " NCBITaxId="243231">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
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        <gene id="10" protId="Q74BJ6" geneId="valS"/>
        <gene id="13" protId="Q74H59" geneId="dnaK"/>
        <gene id="15" protId="Q74DL1" geneId="gdhA"/>
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        <gene id="19" protId="Q74D04" geneId="thrS"/>
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        <gene id="23" protId="Q746U5" geneId="tkt"/>
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        <gene id="29" protId="Q74CJ5" geneId="GSU1678"/>
        <gene id="31" protId="I7FK92" geneId="pgk"/>
        <gene id="33" protId="Q747C7" geneId="groL"/>
        <gene id="35" protId="P61946" geneId="metK"/>
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        <gene id="43" protId="Q74AR6" geneId="eno"/>
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        <gene id="67" protId="Q74BE8" geneId="GSU2093"/>
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        <gene id="75" protId="P61185" geneId="htpG"/>
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        <gene id="107" protId="Q74DU3" geneId="GSU1222"/>
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        <gene id="415" protId="Q747Y9" geneId="GSU3126"/>
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        <gene id="425" protId="P62215" geneId="recA"/>
        <gene id="431" protId="Q74BV2" geneId="GSU1930"/>
        <gene id="432" protId="Q74GZ4" geneId="mglA"/>
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        <gene id="466" protId="Q74ES0" geneId="acyP"/>
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        <gene id="474" protId="Q74GR1" geneId="GSU0184"/>
        <gene id="475" protId="Q74C36" geneId="GSU1839"/>
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        <gene id="479" protId="Q74CY2" geneId="xth"/>
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        <gene id="483" protId="Q74E57" geneId="GSU1107"/>
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        <gene id="489" protId="Q74DJ5" geneId="resA"/>
        <gene id="491" protId="Q74DJ9" geneId="ispB"/>
        <gene id="492" protId="Q74CA9" geneId="GSU1765"/>
        <gene id="494" protId="Q749X9" geneId="fieF"/>
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        <gene id="497" protId="Q74DX2" geneId="GSU1193"/>
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        <gene id="501" protId="Q74H60" geneId="grpE"/>
        <gene id="503" protId="Q74CZ9" geneId="pheT"/>
        <gene id="505" protId="Q74BU1" geneId="birA"/>
        <gene id="507" protId="Q74AP4" geneId="mleA"/>
        <gene id="508" protId="Q74CH3" geneId="maeB"/>
        <gene id="510" protId="Q74D78" geneId="frx-1"/>
        <gene id="513" protId="Q74FZ9" geneId="mqnB"/>
        <gene id="515" protId="Q74CB7" geneId="rimI"/>
        <gene id="517" protId="Q74AX0" geneId="tmk"/>
        <gene id="519" protId="Q748Y3" geneId="rplA"/>
        <gene id="524" protId="Q749J7" geneId="GSU2745"/>
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        <gene id="532" protId="Q74FG0" geneId="rnhB"/>
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        <gene id="536" protId="Q749B1" geneId="rpsK"/>
        <gene id="538" protId="Q74C42" geneId="trpS"/>
        <gene id="540" protId="Q74F07" geneId="GSU0802"/>
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      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="G.sulfurreducens" link="http://www.uniprot.org/taxonomy/243231"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="888"/>
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        <score id="bootstrap" value="0.99"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="681"/>
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        <score id="inparalog" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="671"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="625"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="533"/>
      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.98"/>
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      <geneRef id="12">
        <score id="inparalog" value="0.151"/>
      </geneRef>
      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="475"/>
      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="466"/>
      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="17">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="426"/>
      <geneRef id="18">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="10">
      <score id="bit" value="395"/>
      <geneRef id="20">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="21">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
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