<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="666" inparalogs="2025"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Encephalitozoon cuniculi " NCBITaxId="284813">
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    <notes>
      <additionalInformation abbreviation="E.cuniculi" link="http://www.uniprot.org/taxonomy/284813"/>
    </notes>
  </species>
  <species name="Pteropus alecto " NCBITaxId="9402">
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        <gene id="1940" protId="L5L1F6" geneId="PAL_GLEAN10018753"/>
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        <gene id="1960" protId="L5K8Q2" geneId="PAL_GLEAN10005770"/>
        <gene id="1961" protId="L5KAI9" geneId="PAL_GLEAN10021523"/>
        <gene id="1962" protId="L5K1T0" geneId="PAL_GLEAN10025975"/>
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        <gene id="1969" protId="L5K1C7" geneId="PAL_GLEAN10025798"/>
        <gene id="1970" protId="L5KLS0" geneId="PAL_GLEAN10021852"/>
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        <gene id="1974" protId="L5KQ74" geneId="PAL_GLEAN10001902"/>
        <gene id="1976" protId="L5KT73" geneId="PAL_GLEAN10021152"/>
        <gene id="1978" protId="L5L701" geneId="PAL_GLEAN10006721"/>
        <gene id="1982" protId="L5K9T2" geneId="PAL_GLEAN10012517"/>
        <gene id="1983" protId="L5KZQ0" geneId="PAL_GLEAN10017818"/>
        <gene id="1984" protId="L5K7L6" geneId="PAL_GLEAN10001556"/>
        <gene id="1985" protId="L5L8N2" geneId="PAL_GLEAN10006043"/>
        <gene id="1986" protId="L5L5Z7" geneId="PAL_GLEAN10003543"/>
        <gene id="1987" protId="L5JQY8" geneId="PAL_GLEAN10019925"/>
        <gene id="1988" protId="L5K035" geneId="PAL_GLEAN10014150"/>
        <gene id="1990" protId="L5JVT4" geneId="PAL_GLEAN10019351"/>
        <gene id="1992" protId="L5JXZ8" geneId="PAL_GLEAN10016912"/>
        <gene id="1994" protId="L5KCJ0" geneId="PAL_GLEAN10010619"/>
        <gene id="1996" protId="L5L3A8" geneId="PAL_GLEAN10016620"/>
        <gene id="1998" protId="L5L6S7" geneId="PAL_GLEAN10005986"/>
        <gene id="1999" protId="L5KL38" geneId="PAL_GLEAN10024933"/>
        <gene id="2001" protId="L5KZW1" geneId="PAL_GLEAN10017902"/>
        <gene id="2003" protId="L5K503" geneId="PAL_GLEAN10017344"/>
        <gene id="2005" protId="L5K368" geneId="PAL_GLEAN10017504"/>
        <gene id="2007" protId="L5KV90" geneId="PAL_GLEAN10010950"/>
        <gene id="2009" protId="L5L0L3" geneId="PAL_GLEAN10014081"/>
        <gene id="2011" protId="L5JT99" geneId="PAL_GLEAN10005244"/>
        <gene id="2012" protId="L5JWK9" geneId="PAL_GLEAN10005231"/>
        <gene id="2013" protId="L5K3T7" geneId="PAL_GLEAN10017517"/>
        <gene id="2014" protId="L5K5G0" geneId="PAL_GLEAN10017521"/>
        <gene id="2015" protId="L5KKW4" geneId="PAL_GLEAN10015638"/>
        <gene id="2016" protId="L5JTN8" geneId="PAL_GLEAN10005284"/>
        <gene id="2017" protId="L5KKI6" geneId="PAL_GLEAN10001979"/>
        <gene id="2018" protId="L5KQ35" geneId="PAL_GLEAN10002280"/>
        <gene id="2019" protId="L5K5M5" geneId="PAL_GLEAN10000555"/>
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    <notes>
      <additionalInformation abbreviation="P.alecto" link="http://www.uniprot.org/taxonomy/9402"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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