<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="620" inparalogs="2003"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Drosophila willistoni " NCBITaxId="7260">
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        <gene id="1845" protId="B4MMM1" geneId="DwilGK16652"/>
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        <gene id="1965" protId="B4N7Y5" geneId="DwilGK11957"/>
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        <gene id="1970" protId="B4NMM7" geneId="DwilGK23178"/>
        <gene id="1971" protId="B4NMM4" geneId="DwilGK23174"/>
        <gene id="1972" protId="B4NMM5" geneId="DwilGK23175"/>
        <gene id="1973" protId="B4MQJ3" geneId="DwilGK21884"/>
        <gene id="1974" protId="B4NMM8" geneId="DwilGK23063"/>
        <gene id="1975" protId="B4MQJ2" geneId="DwilGK21417"/>
        <gene id="1977" protId="B4MZV7" geneId="DwilGK24303"/>
        <gene id="1978" protId="B4MZV6" geneId="DwilGK24304"/>
        <gene id="1980" protId="B4NK42" geneId="DwilGK12800"/>
        <gene id="1982" protId="B4NG70" geneId="DwilGK22401"/>
        <gene id="1983" protId="B4N461" geneId="DwilGK11132"/>
        <gene id="1984" protId="B4N462" geneId="DwilGK11593"/>
        <gene id="1985" protId="B4MI93" geneId="DwilGK20274"/>
        <gene id="1986" protId="B4N453" geneId="DwilGK11176"/>
        <gene id="1988" protId="B4MJ42" geneId="DwilGK10306"/>
        <gene id="1990" protId="B4NBK8" geneId="DwilGK11918"/>
        <gene id="1992" protId="B4N2U2" geneId="DwilGK12705"/>
        <gene id="1993" protId="B4NM42" geneId="DwilGK18514"/>
        <gene id="1994" protId="B4MYP6" geneId="DwilGK20173"/>
        <gene id="2000" protId="B4N563" geneId="DwilGK20512"/>
        <gene id="2002" protId="B4N438" geneId="DwilGK11461"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="D.willistoni" link="http://www.uniprot.org/taxonomy/7260"/>
    </notes>
  </species>
  <species name="Moniliophthora perniciosa " NCBITaxId="554373">
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        <gene id="1924" protId="E2LUW3" geneId="MPER_10960"/>
        <gene id="1925" protId="E2LE02" geneId="MPER_04531"/>
        <gene id="1926" protId="E2L765" geneId="MPER_01706"/>
        <gene id="1927" protId="E2LPA0" geneId="MPER_08695"/>
        <gene id="1928" protId="E2LKV3" geneId="MPER_07327"/>
        <gene id="1931" protId="E2LUQ5" geneId="MPER_10895"/>
        <gene id="1958" protId="E2LYI0" geneId="MPER_12370"/>
        <gene id="1959" protId="E2LZT2" geneId="MPER_12882"/>
        <gene id="1960" protId="E2LTG4" geneId="MPER_10380"/>
        <gene id="1961" protId="E2LYM1" geneId="MPER_12414"/>
        <gene id="1964" protId="E2LRN7" geneId="MPER_09654"/>
        <gene id="1966" protId="E2LX66" geneId="MPER_11868"/>
        <gene id="1968" protId="E2LWL5" geneId="MPER_11642"/>
        <gene id="1976" protId="E2LHA4" geneId="MPER_05872"/>
        <gene id="1979" protId="E2M4K8" geneId="MPER_15264"/>
        <gene id="1981" protId="E2LYG5" geneId="MPER_12352"/>
        <gene id="1987" protId="E2LMC0" geneId="MPER_07908"/>
        <gene id="1989" protId="E2LT75" geneId="MPER_10269"/>
        <gene id="1991" protId="E2LUU7" geneId="MPER_10943"/>
        <gene id="1995" protId="E2LYT8" geneId="MPER_12489"/>
        <gene id="1996" protId="E2M0E0" geneId="MPER_13116"/>
        <gene id="1997" protId="E2LYB9" geneId="MPER_12301"/>
        <gene id="1998" protId="E2M0I9" geneId="MPER_13174"/>
        <gene id="1999" protId="E2LSC8" geneId="MPER_09934"/>
        <gene id="2001" protId="E2LJ22" geneId="MPER_06586"/>
        <gene id="2003" protId="E2M138" geneId="MPER_13468"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="M.perniciosa" link="http://www.uniprot.org/taxonomy/554373"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="0.052"/>
      </geneRef>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="713"/>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
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