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    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
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    <notes>
      <additionalInformation abbreviation="D.pseudoobscura" link="http://www.uniprot.org/taxonomy/46245"/>
    </notes>
  </species>
  <species name="Pyrenophora tritici-repentis" NCBITaxId="426418">
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        <gene id="5298" protId="B2VYQ5" geneId="PTRG_02545"/>
        <gene id="5301" protId="B2VUM2" geneId="PTRG_02126"/>
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        <gene id="5307" protId="B2VTV0" geneId="PTRG_01995"/>
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        <gene id="5313" protId="B2WCE5" geneId="PTRG_07654"/>
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        <gene id="5317" protId="B2WF18" geneId="PTRG_08179"/>
        <gene id="5319" protId="B2WCZ3" geneId="PTRG_07852"/>
        <gene id="5321" protId="B2WIW4" geneId="PTRG_09923"/>
        <gene id="5323" protId="B2W126" geneId="PTRG_04161"/>
        <gene id="5324" protId="B2VXY4" geneId="PTRG_03372"/>
        <gene id="5326" protId="B2W1R7" geneId="PTRG_04402"/>
        <gene id="5328" protId="B2WEB8" geneId="PTRG_08491"/>
        <gene id="5330" protId="B2WEF4" geneId="PTRG_08527"/>
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        <gene id="5370" protId="B2W442" geneId="PTRG_05242"/>
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        <gene id="5378" protId="B2VV50" geneId="PTRG_02233"/>
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        <gene id="5424" protId="B2W5M6" geneId="PTRG_04926"/>
        <gene id="5425" protId="B2VTK6" geneId="PTRG_00851"/>
        <gene id="5435" protId="B2W7G0" geneId="PTRG_05748"/>
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        <gene id="5440" protId="B2W8R7" geneId="PTRG_06375"/>
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        <gene id="5444" protId="B2VY88" geneId="PTRG_02378"/>
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        <gene id="5452" protId="B2WMD0" geneId="PTRG_11140"/>
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        <gene id="5458" protId="B2WFJ0" geneId="PTRG_08696"/>
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        <gene id="5460" protId="B2VSQ7" geneId="PTRG_01813"/>
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        <gene id="5465" protId="B2WE15" geneId="PTRG_08388"/>
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        <gene id="5474" protId="B2W2A5" geneId="PTRG_03553"/>
        <gene id="5476" protId="B2W9W7" geneId="PTRG_06775"/>
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        <gene id="5507" protId="B2WB72" geneId="PTRG_06884"/>
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        <gene id="5517" protId="B2W0U1" geneId="PTRG_04076"/>
        <gene id="5548" protId="B2WG60" geneId="PTRG_08916"/>
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        <gene id="5604" protId="B2VR55" geneId="PTRG_00404"/>
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        <gene id="5633" protId="B2WI61" geneId="PTRG_09670"/>
        <gene id="5635" protId="B2WHG7" geneId="PTRG_09426"/>
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        <gene id="5639" protId="B2WEK1" geneId="PTRG_08574"/>
        <gene id="5641" protId="B2VX09" geneId="PTRG_00246"/>
        <gene id="5643" protId="B2VTV4" geneId="PTRG_01999"/>
        <gene id="5645" protId="B2WBW9" geneId="PTRG_07132"/>
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        <gene id="5653" protId="B2W6B5" geneId="PTRG_05353"/>
        <gene id="5674" protId="B2WIT3" geneId="PTRG_09892"/>
        <gene id="5677" protId="B2W8E3" geneId="PTRG_06251"/>
        <gene id="5679" protId="B2VVU7" geneId="PTRG_01309"/>
        <gene id="5681" protId="B2W0C2" geneId="PTRG_03907"/>
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        <gene id="5685" protId="B2WND3" geneId="PTRG_11390"/>
        <gene id="5687" protId="B2W8Z2" geneId="PTRG_06450"/>
        <gene id="5689" protId="B2WK89" geneId="PTRG_10278"/>
        <gene id="5690" protId="B2VV90" geneId="PTRG_01157"/>
        <gene id="5691" protId="B2VUT5" geneId="PTRG_01072"/>
        <gene id="5693" protId="B2VWC6" geneId="PTRG_01488"/>
        <gene id="5694" protId="B2VX22" geneId="PTRG_00259"/>
        <gene id="5696" protId="B2VUW8" geneId="PTRG_01105"/>
        <gene id="5698" protId="B2WD88" geneId="PTRG_07947"/>
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        <gene id="5702" protId="B2W3P8" geneId="PTRG_05098"/>
        <gene id="5704" protId="B2W1L1" geneId="PTRG_04346"/>
        <gene id="5706" protId="B2VZR1" geneId="PTRG_02901"/>
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        <gene id="5740" protId="B2WMJ2" geneId="PTRG_11202"/>
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      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="P.tritici-repentis" link="http://www.uniprot.org/taxonomy/426418"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3578"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2226"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="2004"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="1885"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="1810"/>
      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="1793"/>
      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="1637"/>
      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="1612"/>
      <geneRef id="17">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="18">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="10">
      <score id="bit" value="1597"/>
      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="20">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="1575"/>
      <geneRef id="21">
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