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    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="D.pseudoobscura" link="http://www.uniprot.org/taxonomy/46245"/>
    </notes>
  </species>
  <species name="Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai " NCBITaxId="189518">
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        <gene id="489" protId="Q8F411" geneId="tyrS"/>
        <gene id="491" protId="Q8F7W8" geneId="msrB"/>
        <gene id="493" protId="Q8F7H4" geneId="fabG"/>
        <gene id="495" protId="Q8F144" geneId="uppS"/>
        <gene id="499" protId="Q8EZ25" geneId="LA_4036"/>
        <gene id="501" protId="Q8F4H9" geneId="met17"/>
        <gene id="503" protId="Q8F9A3" geneId="LA_0292"/>
        <gene id="516" protId="Q8F4A8" geneId="putP"/>
        <gene id="519" protId="Q8F4G4" geneId="LA_2077"/>
        <gene id="521" protId="Q8F3K8" geneId="rpe"/>
        <gene id="523" protId="Q8F9Y3" geneId="hisS"/>
        <gene id="526" protId="Q8F801" geneId="gltA"/>
        <gene id="528" protId="Q8F361" geneId="fkpA"/>
        <gene id="530" protId="Q8F7Q9" geneId="nuoM"/>
        <gene id="532" protId="Q8F4A9" geneId="LA_2132"/>
        <gene id="534" protId="Q8F5R1" geneId="wcaG"/>
        <gene id="536" protId="Q8F3F4" geneId="LA_2452"/>
        <gene id="537" protId="Q8F117" geneId="LA_3322"/>
        <gene id="538" protId="Q8F3F8" geneId="LA_2448"/>
        <gene id="539" protId="Q8F115" geneId="LA_3324"/>
        <gene id="540" protId="Q8F3F9" geneId="LA_2447"/>
        <gene id="541" protId="Q8F116" geneId="LA_3323"/>
        <gene id="542" protId="Q8F119" geneId="LA_3320"/>
        <gene id="543" protId="Q8F118" geneId="LA_3321"/>
        <gene id="544" protId="Q8F7S1" geneId="LA_0873"/>
        <gene id="545" protId="Q8F2B3" geneId="LA_2862"/>
        <gene id="546" protId="Q8CXT4" geneId="LA_1530"/>
        <gene id="552" protId="Q8FA04" geneId="suhB"/>
        <gene id="554" protId="Q8F4B1" geneId="LA_2130"/>
        <gene id="556" protId="Q8F3Z7" geneId="thiJ"/>
        <gene id="559" protId="Q8F4H4" geneId="spoVK"/>
        <gene id="568" protId="Q8F8H7" geneId="sul1"/>
        <gene id="576" protId="Q8EY68" geneId="LA_4349"/>
        <gene id="578" protId="Q8EZR9" geneId="add"/>
        <gene id="580" protId="Q9XD33" geneId="rplB"/>
        <gene id="582" protId="Q8EYP5" geneId="ndk"/>
        <gene id="584" protId="Q8EYS4" geneId="LA_4139"/>
        <gene id="586" protId="Q8F4D2" geneId="LA_2109"/>
        <gene id="589" protId="Q8F5Q6" geneId="gcd1"/>
        <gene id="591" protId="Q8F3Y0" geneId="nifS"/>
        <gene id="593" protId="Q8EYR3" geneId="pheS"/>
        <gene id="595" protId="Q8F3K6" geneId="fmt"/>
        <gene id="597" protId="Q8EZG9" geneId="galK"/>
        <gene id="599" protId="Q8F1S6" geneId="LA_3052"/>
        <gene id="601" protId="Q8F1C0" geneId="ispA"/>
        <gene id="604" protId="Q8CXS2" geneId="LA_3127"/>
        <gene id="607" protId="Q8F7D9" geneId="btuE"/>
        <gene id="609" protId="Q8F4I7" geneId="mmsB"/>
        <gene id="611" protId="Q8F936" geneId="gcvH"/>
        <gene id="613" protId="Q8EZ20" geneId="uhpC"/>
        <gene id="616" protId="Q8EZB6" geneId="gpsA"/>
        <gene id="618" protId="Q8F9N0" geneId="nuoI"/>
        <gene id="620" protId="Q8F9F8" geneId="ctaB"/>
        <gene id="622" protId="Q8F774" geneId="mhpD"/>
        <gene id="624" protId="Q8F5P6" geneId="nagB"/>
        <gene id="640" protId="Q8F1L3" geneId="LA_3120"/>
        <gene id="643" protId="Q93LE9" geneId="def"/>
        <gene id="645" protId="Q8F141" geneId="tsf"/>
        <gene id="647" protId="Q8F5T9" geneId="LA_1578"/>
        <gene id="649" protId="Q8F1L4" geneId="LA_3119"/>
        <gene id="651" protId="Q8F8F7" geneId="msrA"/>
        <gene id="653" protId="Q8F2J4" geneId="atpG"/>
        <gene id="655" protId="Q8F622" geneId="rluA"/>
        <gene id="668" protId="Q8F6C6" geneId="LA_1382"/>
        <gene id="669" protId="Q8F968" geneId="LA_0328"/>
        <gene id="673" protId="Q8EZ05" geneId="arp"/>
        <gene id="676" protId="Q8F3A9" geneId="ats1"/>
        <gene id="678" protId="Q8F7H6" geneId="ccmA"/>
        <gene id="680" protId="P59164" geneId="rpsL"/>
        <gene id="682" protId="Q8EZJ0" geneId="coaE"/>
        <gene id="686" protId="Q8EYK3" geneId="eriC"/>
        <gene id="689" protId="Q8EY22" geneId="wzb"/>
        <gene id="691" protId="Q8F9F3" geneId="cyoA"/>
        <gene id="693" protId="Q8F153" geneId="dxs"/>
        <gene id="695" protId="Q8F0R8" geneId="rplK"/>
        <gene id="697" protId="Q8F143" geneId="frr"/>
        <gene id="699" protId="Q8CXR3" geneId="LA_4247"/>
        <gene id="715" protId="Q8F9Z5" geneId="LA_0042"/>
        <gene id="716" protId="Q8EYN5" geneId="LA_4178"/>
        <gene id="717" protId="Q8CVE0" geneId="LA_3999"/>
        <gene id="718" protId="Q8CVD8" geneId="LA_4009"/>
        <gene id="720" protId="Q8F5F1" geneId="lipB"/>
        <gene id="722" protId="Q8F7Q1" geneId="nuoC"/>
        <gene id="728" protId="D5MNY2" geneId="sfcA"/>
        <gene id="730" protId="Q8F6B6" geneId="rbsK"/>
        <gene id="732" protId="Q8F140" geneId="rpsB"/>
        <gene id="734" protId="Q8EYG5" geneId="ada"/>
        <gene id="736" protId="Q8EZ83" geneId="tas"/>
        <gene id="738" protId="Q8F080" geneId="cutA"/>
        <gene id="747" protId="Q8F0Y5" geneId="gst"/>
        <gene id="749" protId="Q8F7R0" geneId="nuoN"/>
        <gene id="752" protId="Q8CVD7" geneId="LA_4215"/>
        <gene id="754" protId="Q8EXE4" geneId="LB_269"/>
        <gene id="756" protId="Q8EYL3" geneId="LA_4200"/>
        <gene id="758" protId="Q8F729" geneId="dut"/>
        <gene id="760" protId="Q8CXT5" geneId="miaA"/>
        <gene id="762" protId="Q8F987" geneId="prmC"/>
        <gene id="764" protId="Q8FA20" geneId="LA_0017"/>
        <gene id="766" protId="Q8F632" geneId="LA_1480"/>
        <gene id="768" protId="Q8EZQ7" geneId="LA_3795"/>
        <gene id="781" protId="Q8F6Z1" geneId="cysA"/>
        <gene id="782" protId="Q8EZY8" geneId="salX"/>
        <gene id="783" protId="Q8F4I5" geneId="ttg2A"/>
        <gene id="784" protId="Q8F9C1" geneId="LA_0274"/>
        <gene id="785" protId="Q8F3J7" geneId="yhbG"/>
        <gene id="786" protId="Q8F6L8" geneId="lolD"/>
        <gene id="790" protId="Q8F285" geneId="LA_2891"/>
        <gene id="793" protId="Q8FA29" geneId="LA_0007"/>
        <gene id="795" protId="Q8F8T7" geneId="LA_0465"/>
        <gene id="800" protId="Q9XD19" geneId="rpsE"/>
        <gene id="802" protId="Q8F4T4" geneId="LA_1955"/>
        <gene id="804" protId="Q8F7L4" geneId="LA_0930"/>
        <gene id="806" protId="Q9XD36" geneId="rplC"/>
        <gene id="808" protId="Q8F8Q2" geneId="dinB"/>
        <gene id="810" protId="Q8EZB9" geneId="LA_3936"/>
        <gene id="812" protId="Q8F7M9" geneId="acuC"/>
        <gene id="814" protId="Q8F3R8" geneId="ubiA"/>
        <gene id="816" protId="Q8F145" geneId="cdsA"/>
        <gene id="819" protId="Q8EZW0" geneId="LA_3741"/>
        <gene id="822" protId="Q8EY77" geneId="tatD"/>
        <gene id="825" protId="Q8F9H1" geneId="LA_0224"/>
        <gene id="827" protId="Q8F1Y2" geneId="eutG"/>
        <gene id="830" protId="Q8CXU0" geneId="LA_1179"/>
        <gene id="832" protId="Q8F9F1" geneId="cyoC"/>
        <gene id="834" protId="Q8F709" geneId="pgsA"/>
        <gene id="836" protId="Q9XD35" geneId="rplD"/>
        <gene id="838" protId="Q8EZ21" geneId="ppa"/>
        <gene id="840" protId="Q9XD11" geneId="rpsK"/>
        <gene id="842" protId="Q8F4R1" geneId="LA_1979"/>
        <gene id="844" protId="Q8F839" geneId="LA_0720"/>
        <gene id="851" protId="Q8F0N7" geneId="glpF"/>
        <gene id="854" protId="Q8F8L8" geneId="LA_0537"/>
        <gene id="856" protId="Q8F2I8" geneId="atpB"/>
        <gene id="858" protId="Q8F497" geneId="serB"/>
        <gene id="860" protId="Q8EXN1" geneId="degQ"/>
        <gene id="861" protId="G1UB32" geneId="LA_2949"/>
        <gene id="862" protId="Q8EXN0" geneId="LB_178"/>
        <gene id="864" protId="Q9XD26" geneId="rplN"/>
        <gene id="866" protId="Q8F0R9" geneId="rplA"/>
        <gene id="868" protId="Q8F061" geneId="pyrC"/>
        <gene id="870" protId="Q8F031" geneId="LA_3666"/>
        <gene id="872" protId="Q8F3W3" geneId="tal"/>
        <gene id="874" protId="Q8F7P9" geneId="nuoA"/>
        <gene id="876" protId="Q8F8Z3" geneId="ksgA"/>
        <gene id="878" protId="Q8F0T2" geneId="rplM"/>
        <gene id="900" protId="Q8F025" geneId="LA_3672"/>
        <gene id="901" protId="Q8F4K6" geneId="LA_2034"/>
        <gene id="904" protId="Q8F1Q1" geneId="LA_3078"/>
        <gene id="907" protId="Q8F5G0" geneId="topA"/>
        <gene id="910" protId="Q8F4W0" geneId="LA_1928"/>
        <gene id="912" protId="Q8F864" geneId="LA_0694"/>
        <gene id="914" protId="Q8F0I0" geneId="purC"/>
        <gene id="916" protId="Q8EXC0" geneId="mtnD"/>
        <gene id="923" protId="Q8F1N2" geneId="LA_3100"/>
        <gene id="925" protId="Q8EZG6" geneId="pgi"/>
        <gene id="927" protId="Q8F473" geneId="LA_2172"/>
        <gene id="929" protId="Q8F2J1" geneId="atpH"/>
        <gene id="931" protId="Q8F438" geneId="sua5"/>
        <gene id="933" protId="Q8EXC1" geneId="mtnB"/>
        <gene id="935" protId="Q8EYX0" geneId="LA_4093"/>
        <gene id="938" protId="P61437" geneId="groS"/>
        <gene id="940" protId="Q8F7Y6" geneId="tmk"/>
        <gene id="943" protId="Q8EY86" geneId="dnaX"/>
        <gene id="945" protId="Q8F965" geneId="LA_0332"/>
        <gene id="947" protId="P61445" geneId="grpE"/>
        <gene id="954" protId="Q8F4A2" geneId="mdh"/>
        <gene id="959" protId="Q8F0U0" geneId="pqqL"/>
        <gene id="962" protId="Q8F6J3" geneId="glnA"/>
        <gene id="966" protId="Q8EZZ2" geneId="mviM"/>
        <gene id="969" protId="Q8F0S5" geneId="rpsG"/>
        <gene id="972" protId="Q8CXR8" geneId="LA_3485"/>
        <gene id="974" protId="Q8F4W8" geneId="LA_1920"/>
        <gene id="975" protId="Q8EZU3" geneId="LA_3758"/>
        <gene id="977" protId="Q8F0T3" geneId="rpsI"/>
        <gene id="979" protId="Q8CXU2" geneId="spoU"/>
        <gene id="994" protId="Q8F8G2" geneId="LA_0595"/>
        <gene id="997" protId="Q8F4C5" geneId="gloB"/>
        <gene id="999" protId="Q9XD29" geneId="rplP"/>
        <gene id="1010" protId="Q8EXY9" geneId="ole1"/>
        <gene id="1012" protId="Q8F4F3" geneId="LA_2088"/>
        <gene id="1014" protId="Q8F0D6" geneId="iscU"/>
        <gene id="1016" protId="Q8F1D2" geneId="LA_3205"/>
        <gene id="1018" protId="Q8F0B7" geneId="LA_3579"/>
        <gene id="1020" protId="P52277" geneId="recA"/>
        <gene id="1022" protId="Q9XD24" geneId="rplE"/>
        <gene id="1024" protId="Q8EZF7" geneId="LA_3897"/>
        <gene id="1026" protId="Q9XD12" geneId="rpsM"/>
        <gene id="1028" protId="Q8F5J3" geneId="argS"/>
        <gene id="1044" protId="Q8F439" geneId="LA_2208"/>
        <gene id="1045" protId="Q8F8M5" geneId="LA_0530"/>
        <gene id="1049" protId="Q8F999" geneId="adhP"/>
        <gene id="1051" protId="Q8F7A1" geneId="lysA"/>
        <gene id="1053" protId="Q9XD32" geneId="rpsS"/>
        <gene id="1055" protId="Q8F1U9" geneId="LA_3029"/>
        <gene id="1057" protId="Q8F811" geneId="LA_0779"/>
        <gene id="1059" protId="Q8EY37" geneId="LB_020"/>
        <gene id="1061" protId="Q9XD37" geneId="rpsJ"/>
        <gene id="1063" protId="Q8F9R1" geneId="thiD"/>
        <gene id="1065" protId="Q8EZD0" geneId="LA_3924"/>
        <gene id="1073" protId="Q8EZL4" geneId="LA_3839"/>
        <gene id="1078" protId="Q8F3T9" geneId="trxA"/>
        <gene id="1080" protId="Q8F2A9" geneId="LA_2867"/>
        <gene id="1081" protId="Q8F6T2" geneId="glpG"/>
        <gene id="1083" protId="Q8F5P1" geneId="LA_1626"/>
        <gene id="1086" protId="Q8F360" geneId="LA_2551"/>
        <gene id="1089" protId="Q8EZ67" geneId="LA_3991"/>
        <gene id="1091" protId="Q8F0N0" geneId="LA_3462"/>
        <gene id="1093" protId="Q8F9Q1" geneId="trmB"/>
        <gene id="1095" protId="Q8F717" geneId="pcm"/>
        <gene id="1098" protId="Q8F2J6" geneId="atpC"/>
        <gene id="1100" protId="Q9XD22" geneId="rpsH"/>
        <gene id="1104" protId="Q8CXU5" geneId="pspE"/>
        <gene id="1106" protId="Q8F051" geneId="LA_3646"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="L.interrogans" link="http://www.uniprot.org/taxonomy/189518"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="0.982"/>
      </geneRef>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="1090"/>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="898"/>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="0.594"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="750"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="709"/>
      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="683"/>
      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="666"/>
      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.87"/>
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      <geneRef id="16">
        <score id="inparalog" value="0.359"/>
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      <geneRef id="17">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="8">
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="9">
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="21">
        <score id="inparalog" value="0.24"/>
      </geneRef>
      <geneRef id="22">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="10">
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        <score id="bootstrap" value="0.99"/>
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      <geneRef id="24">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="11">
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        <score id="bootstrap" value="1"/>
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      <geneRef id="27">
        <score id="inparalog" value="0.314"/>
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      <geneRef id="28">
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    <orthologGroup id="12">
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        <score id="bootstrap" value="1"/>
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    </orthologGroup>
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      <geneRef id="31">
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        <score id="bootstrap" value="1"/>
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      <geneRef id="32">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="14">
      <score id="bit" value="557"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="34">
        <score id="inparalog" value="0.771"/>
      </geneRef>
      <geneRef id="35">
        <score id="inparalog" value="0.39"/>
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      <geneRef id="36">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="15">
      <score id="bit" value="548"/>
      <geneRef id="37">
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        <score id="bootstrap" value="1"/>
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      <geneRef id="38">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="17">
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        <score id="bootstrap" value="1"/>
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      <geneRef id="42">
        <score id="inparalog" value="0.664"/>
      </geneRef>
      <geneRef id="43">
        <score id="inparalog" value="0.23"/>
      </geneRef>
      <geneRef id="44">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="18">
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      <geneRef id="45">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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