<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1156" inparalogs="2569"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="D.plexippus" link="http://www.uniprot.org/taxonomy/13037"/>
    </notes>
  </species>
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    <notes>
      <additionalInformation abbreviation="P.knowlesi" link="http://www.uniprot.org/taxonomy/5851"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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    <orthologGroup id="3">
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        <score id="inparalog" value="0.167"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="0.479"/>
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      <geneRef id="10">
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      <score id="bit" value="1305"/>
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