<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="4948" inparalogs="13641"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Drosophila grimshawi " NCBITaxId="7222">
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        <gene id="13568" protId="B4IWV9" geneId="DgriGH16819"/>
        <gene id="13570" protId="B4JJU9" geneId="DgriGH12544"/>
        <gene id="13572" protId="B4JWF6" geneId="DgriGH23032"/>
        <gene id="13574" protId="B4J9F1" geneId="DgriGH20457"/>
        <gene id="13575" protId="B4J8I6" geneId="DgriGH20554"/>
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        <gene id="13582" protId="B4JF32" geneId="DgriGH19237"/>
        <gene id="13584" protId="B4JAN4" geneId="DgriGH10285"/>
        <gene id="13586" protId="B4JJS1" geneId="DgriGH12534"/>
        <gene id="13588" protId="B4K0C1" geneId="DgriGH23639"/>
        <gene id="13589" protId="B4JEE4" geneId="DgriGH11355"/>
        <gene id="13593" protId="B4K048" geneId="DgriGH22527"/>
        <gene id="13598" protId="B4JAI6" geneId="DgriGH10874"/>
        <gene id="13600" protId="B4J6D1" geneId="DgriGH20758"/>
        <gene id="13602" protId="B4JR35" geneId="DgriGH13068"/>
        <gene id="13603" protId="B4JR36" geneId="DgriGH13067"/>
        <gene id="13604" protId="B4JR37" geneId="DgriGH13810"/>
        <gene id="13608" protId="B4JQX5" geneId="DgriGH13777"/>
        <gene id="13609" protId="B4JBK2" geneId="DgriGH10200"/>
        <gene id="13612" protId="B4J6D0" geneId="DgriGH20759"/>
        <gene id="13615" protId="B4IYY7" geneId="DgriGH17012"/>
        <gene id="13618" protId="B4JN76" geneId="DgriGH24192"/>
        <gene id="13620" protId="B4JRT3" geneId="DgriGH21394"/>
        <gene id="13622" protId="B4JC19" geneId="DgriGH10716"/>
        <gene id="13624" protId="B4JL25" geneId="DgriGH12776"/>
        <gene id="13626" protId="B4JUL3" geneId="DgriGH17311"/>
        <gene id="13627" protId="B4JGZ3" geneId="DgriGH19513"/>
        <gene id="13629" protId="B4JV81" geneId="DgriGH17420"/>
        <gene id="13632" protId="B4JPH4" geneId="DgriGH13518"/>
        <gene id="13634" protId="B4JG59" geneId="DgriGH19420"/>
        <gene id="13635" protId="B4JG74" geneId="DgriGH19425"/>
        <gene id="13637" protId="B4JVM5" geneId="DgriGH22639"/>
        <gene id="13640" protId="B4JCQ2" geneId="DgriGH11679"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="D.grimshawi" link="http://www.uniprot.org/taxonomy/7222"/>
    </notes>
  </species>
  <species name="Oryctolagus cuniculus " NCBITaxId="9986">
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        <gene id="8" protId="G1SCK0" geneId="PRPF8"/>
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        <gene id="11" protId="G1U5H8" geneId="RYR3"/>
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        <gene id="14" protId="G1TIT8" geneId="RYR-2"/>
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        <gene id="18" protId="G1U864" geneId="uncharacterized_G1U864"/>
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        <gene id="89" protId="G1SRC9" geneId="BIRC6"/>
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        <gene id="93" protId="G1TEJ6" geneId="uncharacterized_G1TEJ6"/>
        <gene id="95" protId="G1TAG2" geneId="uncharacterized_G1TAG2"/>
        <gene id="96" protId="G1TPH5" geneId="uncharacterized_G1TPH5"/>
        <gene id="98" protId="G1SQ12" geneId="uncharacterized_G1SQ12"/>
        <gene id="99" protId="G1U9B3" geneId="uncharacterized_G1U9B3"/>
        <gene id="101" protId="G1T5I1" geneId="uncharacterized_G1T5I1"/>
        <gene id="102" protId="P15381" geneId="CACNA1C"/>
        <gene id="103" protId="P07293" geneId="CACNA1S"/>
        <gene id="105" protId="G1SRZ8" geneId="LOC100348223"/>
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        <gene id="108" protId="G1TM73" geneId="CHD3"/>
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        <gene id="114" protId="G1TKS9" geneId="MHC"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="O.cuniculus" link="http://www.uniprot.org/taxonomy/9986"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="4847"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="4749"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="4473"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="4416"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="11">
        <score id="inparalog" value="0.415"/>
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