<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="2036" inparalogs="5679"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Caenorhabditis remanei " NCBITaxId="31234">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
        <gene id="1" protId="E3MG41" geneId="Cre-dhc-1"/>
        <gene id="3" protId="E3LT33" geneId="Cre-prp-8"/>
        <gene id="5" protId="E3LGA7" geneId="Cre-pyr-1"/>
        <gene id="7" protId="E3MVD4" geneId="CRE_24595"/>
        <gene id="9" protId="E3LRX1" geneId="Cre-chc-1"/>
        <gene id="11" protId="E3N5G7" geneId="Cre-ama-1"/>
        <gene id="13" protId="E3MMN6" geneId="CRE_03263"/>
        <gene id="15" protId="E3M8Z6" geneId="CRE_13961"/>
        <gene id="17" protId="E3MU03" geneId="CRE_22485"/>
        <gene id="19" protId="E3M709" geneId="CRE_10060"/>
        <gene id="21" protId="E3MCL2" geneId="Cre-rpb-2"/>
        <gene id="23" protId="E3N705" geneId="CRE_12256"/>
        <gene id="25" protId="E3LPS0" geneId="Cre-pyc-1"/>
        <gene id="27" protId="E3NH78" geneId="CRE_14333"/>
        <gene id="30" protId="E3M4L1" geneId="Cre-mog-5"/>
        <gene id="32" protId="E3LZ13" geneId="CRE_04747"/>
        <gene id="34" protId="E3MFG3" geneId="Cre-eft-2"/>
        <gene id="35" protId="E3NK36" geneId="CRE_03500"/>
        <gene id="37" protId="E3M749" geneId="CRE_12654"/>
        <gene id="38" protId="E3NUH3" geneId="Cre-rpc-1"/>
        <gene id="40" protId="E3LFQ3" geneId="Cre-cdc-48.1"/>
        <gene id="41" protId="E3LGU5" geneId="Cre-cdc-48.2"/>
        <gene id="43" protId="E3MCE8" geneId="Cre-pod-2"/>
        <gene id="45" protId="E3LSK7" geneId="Cre-rnr-1"/>
        <gene id="47" protId="E3MNY3" geneId="Cre-aco-2"/>
        <gene id="49" protId="E3NGZ9" geneId="Cre-eft-1"/>
        <gene id="51" protId="E3M5G5" geneId="Cre-iars-1"/>
        <gene id="53" protId="E3N4R9" geneId="CRE_01242"/>
        <gene id="55" protId="E3LH66" geneId="Cre-top-2"/>
        <gene id="57" protId="E3LDP8" geneId="Cre-nnt-1"/>
        <gene id="59" protId="E3LMM3" geneId="Cre-let-363"/>
        <gene id="61" protId="E3MK06" geneId="Cre-hsp-1"/>
        <gene id="63" protId="E3LS32" geneId="Cre-mog-1"/>
        <gene id="65" protId="E3MMF2" geneId="Cre-mrp-4"/>
        <gene id="66" protId="E3LSW3" geneId="CRE_25095"/>
        <gene id="67" protId="E3N6I7" geneId="Cre-mrp-7"/>
        <gene id="68" protId="E3MB30" geneId="Cre-mrp-3"/>
        <gene id="69" protId="E3MAA6" geneId="Cre-mrp-2"/>
        <gene id="71" protId="E3LYE2" geneId="Cre-sca-1"/>
        <gene id="73" protId="E3LVH1" geneId="CRE_29522"/>
        <gene id="75" protId="E3LPX5" geneId="CRE_27041"/>
        <gene id="77" protId="E3M641" geneId="CRE_10246"/>
        <gene id="79" protId="E3LRC8" geneId="CRE_26575"/>
        <gene id="81" protId="E3M8W9" geneId="Cre-vars-2"/>
        <gene id="83" protId="E3NNM1" geneId="CRE_14385"/>
        <gene id="84" protId="E3N741" geneId="CRE_11402"/>
        <gene id="86" protId="E3LRK3" geneId="Cre-mog-4"/>
        <gene id="88" protId="E3MLX0" geneId="CRE_29868"/>
        <gene id="89" protId="E3NSP2" geneId="CRE_03570"/>
        <gene id="91" protId="E3LMD7" geneId="Cre-smg-2"/>
        <gene id="93" protId="E3MNB7" geneId="Cre-daf-21"/>
        <gene id="95" protId="E3LZ05" geneId="CRE_04546"/>
        <gene id="97" protId="E3M5Q3" geneId="CRE_11128"/>
        <gene id="98" protId="E3MV39" geneId="CRE_20884"/>
        <gene id="99" protId="E3M7Q2" geneId="CRE_12565"/>
        <gene id="100" protId="E3LEJ9" geneId="CRE_00333"/>
        <gene id="102" protId="E3LDQ5" geneId="Cre-hsp-3"/>
        <gene id="103" protId="E3LQD8" geneId="Cre-hsp-4"/>
        <gene id="105" protId="E3N6K8" geneId="Cre-lars-1"/>
        <gene id="106" protId="E3N6M1" geneId="CRE_06956"/>
        <gene id="107" protId="E3N6M0" geneId="CRE_06955"/>
        <gene id="109" protId="E3MGG7" geneId="Cre-aars-2"/>
        <gene id="111" protId="E3M810" geneId="CRE_12632"/>
        <gene id="113" protId="E3LKD1" geneId="Cre-xpo-1"/>
        <gene id="115" protId="E3MFI3" geneId="CRE_20709"/>
        <gene id="117" protId="E3MFH1" geneId="Cre-tat-5"/>
        <gene id="119" protId="E3NL46" geneId="Cre-uba-1"/>
        <gene id="120" protId="E3MLZ3" geneId="CRE_29973"/>
        <gene id="122" protId="E3ND69" geneId="CRE_01337"/>
        <gene id="123" protId="E3NS05" geneId="CRE_31614"/>
        <gene id="125" protId="E3N309" geneId="Cre-tat-1"/>
        <gene id="127" protId="E3LY62" geneId="Cre-pgp-2"/>
        <gene id="128" protId="E3MYA2" geneId="Cre-pgp-1"/>
        <gene id="130" protId="E3MUE2" geneId="Cre-sdha-1"/>
        <gene id="131" protId="E3LMQ6" geneId="Cre-sdha-2"/>
        <gene id="133" protId="E3MHZ4" geneId="Cre-agl-1"/>
        <gene id="135" protId="E3LMT9" geneId="Cre-teg-4"/>
        <gene id="137" protId="E3N3U9" geneId="Cre-rpn-1"/>
        <gene id="139" protId="E3LK16" geneId="Cre-hsp-6"/>
        <gene id="141" protId="E3LU34" geneId="CRE_30753"/>
        <gene id="142" protId="E3M9Y0" geneId="CRE_17185"/>
        <gene id="144" protId="E3LTL3" geneId="Cre-vha-13"/>
        <gene id="146" protId="E3M299" geneId="Cre-nmy-1"/>
        <gene id="147" protId="E3NCM7" geneId="CRE_22106"/>
        <gene id="148" protId="E3LQ24" geneId="Cre-myo-3"/>
        <gene id="149" protId="E3MFC9" geneId="Cre-unc-54"/>
        <gene id="150" protId="E3LZI9" geneId="Cre-myo-5"/>
        <gene id="151" protId="E3NE23" geneId="Cre-let-75"/>
        <gene id="152" protId="E3MRN1" geneId="Cre-myo-2"/>
        <gene id="154" protId="E3LMQ8" geneId="CRE_28176"/>
        <gene id="156" protId="E3M0W8" geneId="CRE_06434"/>
        <gene id="158" protId="E3MES6" geneId="Cre-sec-23"/>
        <gene id="160" protId="E3LQ13" geneId="Cre-elpc-3"/>
        <gene id="162" protId="E3MCU5" geneId="CRE_20336"/>
        <gene id="164" protId="E3LCJ3" geneId="Cre-mec-7"/>
        <gene id="165" protId="E3MAW7" geneId="Cre-tbb-4"/>
        <gene id="166" protId="E3M8D5" geneId="Cre-tbb-2"/>
        <gene id="167" protId="E3LZH1" geneId="Cre-tbb-1"/>
        <gene id="169" protId="E3MSM2" geneId="CRE_16215"/>
        <gene id="171" protId="E3LHJ0" geneId="CRE_08793"/>
        <gene id="173" protId="E3LF53" geneId="CRE_01727"/>
        <gene id="175" protId="E3MFZ5" geneId="Cre-abce-1"/>
        <gene id="177" protId="E3LCC5" geneId="CRE_00499"/>
        <gene id="178" protId="E3MCI0" geneId="CRE_20182"/>
        <gene id="180" protId="E3MVI0" geneId="CRE_24084"/>
        <gene id="182" protId="E3N2N6" geneId="Cre-pmr-1"/>
        <gene id="184" protId="E3LVN1" geneId="Cre-hum-1"/>
        <gene id="186" protId="E3MII3" geneId="CRE_02332"/>
        <gene id="188" protId="E3LJV3" geneId="CRE_18907"/>
        <gene id="190" protId="E3M7Q4" geneId="CRE_12774"/>
        <gene id="192" protId="E3M332" geneId="Cre-tba-1"/>
        <gene id="193" protId="E3MWB0" geneId="Cre-mec-12"/>
        <gene id="194" protId="E3LLP0" geneId="CRE_28534"/>
        <gene id="195" protId="E3N2P5" geneId="Cre-tba-2"/>
        <gene id="196" protId="E3MIH3" geneId="Cre-tba-7"/>
        <gene id="197" protId="E3LCH3" geneId="Cre-tba-9"/>
        <gene id="199" protId="E3LQP4" geneId="Cre-unc-104"/>
        <gene id="201" protId="E3N2S4" geneId="Cre-mcm-2"/>
        <gene id="203" protId="E3LEM2" geneId="Cre-vha-12"/>
        <gene id="204" protId="E3MX83" geneId="Cre-tag-300"/>
        <gene id="206" protId="E3N1I3" geneId="CRE_14174"/>
        <gene id="208" protId="E3LCV1" geneId="CRE_00061"/>
        <gene id="210" protId="E3LRV2" geneId="Cre-apb-1"/>
        <gene id="212" protId="E3MCY6" geneId="Cre-cct-5"/>
        <gene id="214" protId="E3LUJ1" geneId="CRE_30833"/>
        <gene id="216" protId="E3LWS3" geneId="CRE_02939"/>
        <gene id="218" protId="E3MID2" geneId="CRE_01011"/>
        <gene id="220" protId="E3LKH8" geneId="Cre-nuo-5"/>
        <gene id="222" protId="E3MI71" geneId="Cre-smc-3"/>
        <gene id="224" protId="E3MHD0" geneId="CRE_22811"/>
        <gene id="225" protId="E3MHB0" geneId="CRE_22873"/>
        <gene id="226" protId="E3MAC6" geneId="Cre-aagr-4"/>
        <gene id="228" protId="E3LVR4" geneId="Cre-fasn-1"/>
        <gene id="238" protId="E3M907" geneId="Cre-agef-1"/>
        <gene id="239" protId="E3LQY2" geneId="CRE_26240"/>
        <gene id="241" protId="E3MF82" geneId="CRE_21279"/>
        <gene id="243" protId="E3MY43" geneId="Cre-atp-2"/>
        <gene id="245" protId="E3LF07" geneId="CRE_01704"/>
        <gene id="247" protId="E3NKU6" geneId="Cre-hum-2"/>
        <gene id="249" protId="E3MMY7" geneId="Cre-xrn-1"/>
        <gene id="251" protId="E3MAV5" geneId="Cre-apa-2"/>
        <gene id="253" protId="E3LWK6" geneId="Cre-ssl-1"/>
        <gene id="255" protId="E3LFF7" geneId="Cre-nuo-1"/>
        <gene id="257" protId="E3NIL0" geneId="CRE_12336"/>
        <gene id="258" protId="E3NIK9" geneId="CRE_12335"/>
        <gene id="260" protId="E3LPW3" geneId="Cre-rpt-1"/>
        <gene id="262" protId="E3LFX3" geneId="Cre-tars-1"/>
        <gene id="264" protId="E3MQ05" geneId="Cre-gsy-1"/>
        <gene id="266" protId="E3LGS9" geneId="Cre-cct-1"/>
        <gene id="268" protId="E3M506" geneId="CRE_11021"/>
        <gene id="269" protId="E3NMJ8" geneId="CRE_05289"/>
        <gene id="271" protId="E3LYU1" geneId="Cre-cct-6"/>
        <gene id="273" protId="E3M4H2" geneId="CRE_11753"/>
        <gene id="274" protId="E3MX22" geneId="CRE_09656"/>
        <gene id="276" protId="E3MFF7" geneId="CRE_20763"/>
        <gene id="277" protId="E3LY66" geneId="CRE_03767"/>
        <gene id="279" protId="E3LLX9" geneId="CRE_28361"/>
        <gene id="281" protId="E3MNJ4" geneId="Cre-hsp-60"/>
        <gene id="283" protId="E3M577" geneId="CRE_11045"/>
        <gene id="285" protId="E3LYN3" geneId="CRE_04677"/>
        <gene id="287" protId="E3MFA6" geneId="Cre-apg-1"/>
        <gene id="289" protId="E3ML13" geneId="Cre-mcm-5"/>
        <gene id="291" protId="E3NEN1" geneId="CRE_12300"/>
        <gene id="292" protId="E3NTR4" geneId="CRE_02775"/>
        <gene id="293" protId="E3NEP0" geneId="CRE_12304"/>
        <gene id="294" protId="E3NT44" geneId="CRE_21686"/>
        <gene id="295" protId="E3NEN9" geneId="CRE_12303"/>
        <gene id="296" protId="E3NTV2" geneId="CRE_04463"/>
        <gene id="297" protId="E3NT45" geneId="CRE_21687"/>
        <gene id="298" protId="E3NEN6" geneId="CRE_12301"/>
        <gene id="300" protId="E3NHT5" geneId="CRE_23157"/>
        <gene id="302" protId="E3MM32" geneId="CRE_29898"/>
        <gene id="304" protId="E3LVP6" geneId="CRE_29770"/>
        <gene id="306" protId="E3MWG9" geneId="CRE_01188"/>
        <gene id="308" protId="E3LG26" geneId="Cre-cct-2"/>
        <gene id="310" protId="E3NDB1" geneId="Cre-mca-2"/>
        <gene id="311" protId="E3MM86" geneId="Cre-mca-3"/>
        <gene id="315" protId="E3LS69" geneId="Cre-mcm-6"/>
        <gene id="317" protId="E3M5L2" geneId="Cre-tax-6"/>
        <gene id="319" protId="E3N077" geneId="Cre-unc-32"/>
        <gene id="320" protId="E3M6T1" geneId="Cre-vha-5"/>
        <gene id="321" protId="E3LF96" geneId="Cre-vha-6"/>
        <gene id="322" protId="E3MLV8" geneId="Cre-vha-7"/>
        <gene id="324" protId="E3M911" geneId="Cre-gpi-1"/>
        <gene id="326" protId="E3MZI8" geneId="Cre-cct-3"/>
        <gene id="328" protId="E3LUK4" geneId="Cre-rpt-2"/>
        <gene id="330" protId="E3LMU2" geneId="Cre-ahcy-1"/>
        <gene id="332" protId="E3MT78" geneId="Cre-nsf-1"/>
        <gene id="333" protId="E3N452" geneId="CRE_24161"/>
        <gene id="335" protId="E3LF38" geneId="Cre-trr-1"/>
        <gene id="337" protId="E3N0I7" geneId="Cre-emb-4"/>
        <gene id="339" protId="E3LGN3" geneId="Cre-cct-4"/>
        <gene id="341" protId="E3M3H8" geneId="Cre-mcm-4"/>
        <gene id="343" protId="E3LUF3" geneId="CRE_31067"/>
        <gene id="345" protId="E3NKC7" geneId="CRE_15786"/>
        <gene id="347" protId="E3LUT0" geneId="CRE_30879"/>
        <gene id="349" protId="E3NCJ2" geneId="Cre-mcm-3"/>
        <gene id="351" protId="E3NQB2" geneId="CRE_12421"/>
        <gene id="352" protId="E3MR02" geneId="Cre-drp-1"/>
        <gene id="354" protId="E3LLI7" geneId="Cre-cct-7"/>
        <gene id="356" protId="E3LVU5" geneId="Cre-rad-54"/>
        <gene id="358" protId="E3LQL8" geneId="Cre-kars-1"/>
        <gene id="360" protId="E3M0M5" geneId="CRE_05666"/>
        <gene id="362" protId="E3MCH4" geneId="Cre-gas-1"/>
        <gene id="363" protId="E3LWZ9" geneId="Cre-nduf-2.2"/>
        <gene id="365" protId="E3MVI3" geneId="Cre-catp-4"/>
        <gene id="366" protId="E3MLW7" geneId="Cre-catp-6"/>
        <gene id="368" protId="E3MWG6" geneId="Cre-cgh-1"/>
        <gene id="370" protId="E3NLF4" geneId="CRE_09872"/>
        <gene id="371" protId="E3M7Y2" geneId="Cre-mars-1"/>
        <gene id="373" protId="E3LM11" geneId="Cre-spg-7"/>
        <gene id="375" protId="E3M296" geneId="CRE_07530"/>
        <gene id="377" protId="E3MG50" geneId="CRE_24033"/>
        <gene id="378" protId="E3LF48" geneId="CRE_02119"/>
        <gene id="380" protId="E3LMJ8" geneId="Cre-rpt-5"/>
        <gene id="382" protId="E3NP24" geneId="CRE_06212"/>
        <gene id="384" protId="E3NHE9" geneId="Cre-gars-1"/>
        <gene id="385" protId="E3NAC9" geneId="CRE_31457"/>
        <gene id="387" protId="E3LYU2" geneId="Cre-ddx-23"/>
        <gene id="389" protId="E3LVX2" geneId="CRE_29809"/>
        <gene id="391" protId="E3LFW3" geneId="Cre-alh-8"/>
        <gene id="394" protId="E3NH27" geneId="Cre-gsp-2"/>
        <gene id="396" protId="E3LMP4" geneId="CRE_28484"/>
        <gene id="398" protId="E3LG28" geneId="Cre-enol-1"/>
        <gene id="400" protId="E3LWZ2" geneId="Cre-let-721"/>
        <gene id="402" protId="E3N753" geneId="CRE_11384"/>
        <gene id="404" protId="E3N1J1" geneId="Cre-unc-101"/>
        <gene id="405" protId="E3LVH3" geneId="Cre-apm-1"/>
        <gene id="407" protId="E3LWN2" geneId="Cre-abcf-3"/>
        <gene id="409" protId="E3MTZ6" geneId="Cre-pptr-2"/>
        <gene id="411" protId="E3NP95" geneId="Cre-iffb-1"/>
        <gene id="413" protId="E3LJ75" geneId="CRE_08653"/>
        <gene id="414" protId="E3MY85" geneId="CRE_31370"/>
        <gene id="417" protId="E3LFX1" geneId="CRE_01861"/>
        <gene id="419" protId="E3LRW0" geneId="CRE_25199"/>
        <gene id="420" protId="E3MYG7" geneId="Cre-vbh-1"/>
        <gene id="422" protId="E3MCJ1" geneId="Cre-inf-1"/>
        <gene id="424" protId="E3LGI7" geneId="Cre-fars-3"/>
        <gene id="426" protId="E3LN27" geneId="CRE_28272"/>
        <gene id="427" protId="E3NCN2" geneId="Cre-rpt-6"/>
        <gene id="428" protId="E3LN24" geneId="CRE_28562"/>
        <gene id="430" protId="E3LKW3" geneId="Cre-mcm-7"/>
        <gene id="431" protId="E3LKS8" geneId="CRE_18974"/>
        <gene id="433" protId="E3LXB7" geneId="CRE_03827"/>
        <gene id="435" protId="E3M8I7" geneId="CRE_13290"/>
        <gene id="437" protId="E3MLV7" geneId="CRE_29956"/>
        <gene id="438" protId="E3NRF2" geneId="CRE_16540"/>
        <gene id="440" protId="E3LX06" geneId="CRE_03184"/>
        <gene id="441" protId="E3LIK9" geneId="CRE_09394"/>
        <gene id="443" protId="E3LWY9" geneId="Cre-mel-32"/>
        <gene id="446" protId="E3MNE9" geneId="Cre-hda-1"/>
        <gene id="447" protId="E3MUH8" geneId="CRE_21947"/>
        <gene id="448" protId="E3LYT3" geneId="CRE_04702"/>
        <gene id="450" protId="E3LRW7" geneId="Cre-cts-1"/>
        <gene id="452" protId="E3NCV6" geneId="Cre-pars-1"/>
        <gene id="454" protId="E3M8H2" geneId="CRE_13377"/>
        <gene id="456" protId="E3MK80" geneId="Cre-pmp-4"/>
        <gene id="458" protId="E3NFY1" geneId="CRE_29194"/>
        <gene id="460" protId="E3MSR9" geneId="Cre-let-92"/>
        <gene id="461" protId="E3NTI5" geneId="CRE_07953"/>
        <gene id="463" protId="E3LXJ9" geneId="CRE_03867"/>
        <gene id="465" protId="E3N948" geneId="CRE_24737"/>
        <gene id="467" protId="E3NM67" geneId="CRE_14378"/>
        <gene id="468" protId="E3MY78" geneId="CRE_31366"/>
        <gene id="470" protId="E3NHC9" geneId="CRE_16463"/>
        <gene id="472" protId="E3MJV3" geneId="CRE_28655"/>
        <gene id="473" protId="E3MJV2" geneId="CRE_28757"/>
        <gene id="475" protId="E3LGK6" geneId="Cre-hel-1"/>
        <gene id="477" protId="E3LZ42" geneId="Cre-paa-1"/>
        <gene id="479" protId="E3LWQ4" geneId="Cre-rpn-2"/>
        <gene id="481" protId="E3M3H5" geneId="CRE_08117"/>
        <gene id="483" protId="E3NTI0" geneId="Cre-abtm-1"/>
        <gene id="485" protId="E3NGD1" geneId="Cre-him-1"/>
        <gene id="487" protId="E3M2S7" geneId="CRE_07290"/>
        <gene id="489" protId="E3M4E1" geneId="Cre-pld-1"/>
        <gene id="491" protId="E3LFH0" geneId="Cre-let-858"/>
        <gene id="493" protId="E3M491" geneId="CRE_11716"/>
        <gene id="495" protId="E3LDM4" geneId="CRE_00653"/>
        <gene id="496" protId="E3LXN7" geneId="CRE_03886"/>
        <gene id="498" protId="E3LH00" geneId="CRE_02046"/>
        <gene id="500" protId="E3LL32" geneId="Cre-gei-7"/>
        <gene id="502" protId="E3LLY3" geneId="Cre-pgk-1"/>
        <gene id="504" protId="E3LZH4" geneId="CRE_04622"/>
        <gene id="506" protId="E3N712" geneId="Cre-rha-2"/>
        <gene id="508" protId="E3NBU6" geneId="Cre-cutl-6"/>
        <gene id="510" protId="E3MPT1" geneId="CRE_12079"/>
        <gene id="511" protId="E3LZC4" geneId="Cre-cul-1"/>
        <gene id="512" protId="E3MUK7" geneId="CRE_21370"/>
        <gene id="514" protId="E3MFG1" geneId="Cre-pyk-1"/>
        <gene id="515" protId="E3M7J6" geneId="CRE_12537"/>
        <gene id="517" protId="E3NAX9" geneId="Cre-ruvb-1"/>
        <gene id="519" protId="E3MIG9" geneId="Cre-gbf-1"/>
        <gene id="521" protId="E3N5S1" geneId="Cre-daf-15"/>
        <gene id="522" protId="E3NPU4" geneId="CRE_07920"/>
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        <gene id="1052" protId="E3MQX9" geneId="Cre-mre-11"/>
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        <gene id="1604" protId="E3M3X2" geneId="Cre-fce-1"/>
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        <gene id="1612" protId="E3MA33" geneId="Cre-ncs-1"/>
        <gene id="1614" protId="E3MAM9" geneId="Cre-hda-4"/>
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        <gene id="1618" protId="E3MVA7" geneId="Cre-cpt-1"/>
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        <gene id="1624" protId="E3LS48" geneId="Cre-gpdh-2"/>
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        <gene id="1704" protId="E3MCJ0" geneId="Cre-byn-1"/>
        <gene id="1706" protId="E3MSH5" geneId="Cre-uaf-1"/>
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        <gene id="1905" protId="E3NGU3" geneId="Cre-ubc-1"/>
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        <gene id="1910" protId="E3M6N9" geneId="CRE_09989"/>
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        <gene id="1916" protId="E3LS31" geneId="Cre-alx-1"/>
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        <gene id="1920" protId="E3ME91" geneId="CRE_22348"/>
        <gene id="1922" protId="E3N9V9" geneId="Cre-vha-11"/>
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        <gene id="1926" protId="E3LRP4" geneId="CRE_26094"/>
        <gene id="1928" protId="E3MF78" geneId="CRE_21275"/>
        <gene id="1930" protId="E3MT28" geneId="Cre-rps-23"/>
        <gene id="1932" protId="E3NDX9" geneId="Cre-sec-15"/>
        <gene id="1934" protId="E3NE73" geneId="Cre-clpp-1"/>
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        <gene id="1949" protId="E3LPY3" geneId="CRE_27360"/>
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        <gene id="1955" protId="E3NTL2" geneId="CRE_20651"/>
        <gene id="1956" protId="E3M7E8" geneId="Cre-dif-1"/>
        <gene id="1958" protId="E3LS66" geneId="CRE_25254"/>
        <gene id="1960" protId="E3LGX2" geneId="CRE_02031"/>
        <gene id="1962" protId="E3NHW9" geneId="CRE_02669"/>
        <gene id="1964" protId="E3LG96" geneId="CRE_01528"/>
        <gene id="1967" protId="E3LNM1" geneId="CRE_27134"/>
        <gene id="1968" protId="E3MXQ1" geneId="CRE_27746"/>
        <gene id="1970" protId="E3NMH4" geneId="CRE_23206"/>
        <gene id="1971" protId="E3M697" geneId="CRE_10279"/>
        <gene id="1973" protId="E3MVS8" geneId="Cre-nuo-2"/>
        <gene id="1975" protId="E3MMW9" geneId="CRE_04098"/>
        <gene id="1976" protId="E3MMX0" geneId="CRE_04099"/>
        <gene id="1978" protId="E3LF64" geneId="Cre-dnj-13"/>
        <gene id="1980" protId="E3MCN5" geneId="Cre-arx-6"/>
        <gene id="1982" protId="E3MS48" geneId="Cre-toe-1"/>
        <gene id="1984" protId="E3N412" geneId="Cre-dnj-11"/>
        <gene id="1986" protId="E3LGN4" geneId="Cre-nst-1"/>
        <gene id="1988" protId="E3MCK9" geneId="CRE_20195"/>
        <gene id="1990" protId="E3MT66" geneId="CRE_20408"/>
        <gene id="1992" protId="E3MXA0" geneId="Cre-elpc-1"/>
        <gene id="1994" protId="E3MST0" geneId="Cre-fat-6"/>
        <gene id="1995" protId="E3N6F2" geneId="Cre-fat-5"/>
        <gene id="1998" protId="E3N127" geneId="CRE_12976"/>
        <gene id="1999" protId="E3NIU0" geneId="CRE_15754"/>
        <gene id="2000" protId="E3MMR1" geneId="CRE_03213"/>
        <gene id="2002" protId="E3LXM1" geneId="CRE_03879"/>
        <gene id="2005" protId="E3M0A8" geneId="CRE_05617"/>
        <gene id="2007" protId="E3M910" geneId="Cre-ubc-14"/>
        <gene id="2009" protId="E3N371" geneId="Cre-prp-21"/>
        <gene id="2011" protId="E3NHX6" geneId="CRE_02673"/>
        <gene id="2013" protId="E3N5N3" geneId="Cre-rap-1"/>
        <gene id="2014" protId="E3NWX8" geneId="CRE_19646"/>
        <gene id="2015" protId="E3NCJ0" geneId="Cre-rap-2"/>
        <gene id="2017" protId="E3M6W5" geneId="CRE_10205"/>
        <gene id="2018" protId="E3MIL0" geneId="CRE_02394"/>
        <gene id="2020" protId="E3MT21" geneId="Cre-ccr-4"/>
        <gene id="2022" protId="E3LRP5" geneId="CRE_26095"/>
        <gene id="2024" protId="E3N3X6" geneId="Cre-dyci-1"/>
        <gene id="2026" protId="E3LJT6" geneId="CRE_18897"/>
        <gene id="2027" protId="E3LJT5" geneId="CRE_18896"/>
        <gene id="2029" protId="E3NQN8" geneId="Cre-cyn-12"/>
        <gene id="2030" protId="E3M737" geneId="CRE_12649"/>
        <gene id="2032" protId="E3MCI2" geneId="CRE_20183"/>
        <gene id="2034" protId="E3MCL9" geneId="Cre-ula-1"/>
        <gene id="2036" protId="E3NHE7" geneId="Cre-oxy-4"/>
        <gene id="2038" protId="E3NUM4" geneId="CRE_29393"/>
        <gene id="2040" protId="E3M206" geneId="Cre-bet-2"/>
        <gene id="2042" protId="E3LYX5" geneId="Cre-rpl-23"/>
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        <gene id="2046" protId="E3NCU8" geneId="Cre-psd-1"/>
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        <gene id="2050" protId="E3LY40" geneId="Cre-obr-4"/>
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        <gene id="2085" protId="E3MN37" geneId="CRE_04063"/>
        <gene id="2086" protId="E3MN17" geneId="CRE_04054"/>
        <gene id="2088" protId="E3LFY7" geneId="Cre-cyn-11"/>
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        <gene id="2092" protId="E3M7Y8" geneId="CRE_12621"/>
        <gene id="2094" protId="E3MDF6" geneId="CRE_17806"/>
        <gene id="2096" protId="E3M900" geneId="CRE_13962"/>
        <gene id="2098" protId="E3LVM8" geneId="Cre-rps-15"/>
        <gene id="2100" protId="E3MI37" geneId="Cre-ccf-1"/>
        <gene id="2102" protId="E3M8P3" geneId="CRE_13992"/>
        <gene id="2104" protId="E3MF59" geneId="CRE_21263"/>
        <gene id="2106" protId="E3NC66" geneId="Cre-arl-8"/>
        <gene id="2108" protId="E3LIF9" geneId="Cre-trm-1"/>
        <gene id="2110" protId="E3LPD8" geneId="CRE_27270"/>
        <gene id="2112" protId="E3LVZ4" geneId="CRE_29604"/>
        <gene id="2114" protId="E3MQD1" geneId="Cre-cnb-1"/>
        <gene id="2116" protId="E3NGS8" geneId="CRE_04334"/>
        <gene id="2118" protId="E3NIU2" geneId="Cre-usp-14"/>
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        <gene id="2122" protId="E3MI34" geneId="Cre-nft-1"/>
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        <gene id="4090" protId="E3MGI2" geneId="Cre-acin-1"/>
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        <gene id="4570" protId="E3LZG7" geneId="CRE_04830"/>
        <gene id="4572" protId="E3ME64" geneId="Cre-syx-2"/>
        <gene id="4574" protId="E3NFL1" geneId="CRE_22115"/>
        <gene id="4576" protId="E3N2G6" geneId="Cre-pole-2"/>
        <gene id="4578" protId="E3NJ90" geneId="Cre-pfd-6"/>
        <gene id="4580" protId="E3NUP3" geneId="CRE_15156"/>
        <gene id="4582" protId="E3MSJ3" geneId="Cre-col-88"/>
        <gene id="4583" protId="E3MYS1" geneId="CRE_04165"/>
        <gene id="4584" protId="E3N5W7" geneId="Cre-col-107"/>
        <gene id="4585" protId="E3MQB5" geneId="Cre-col-156"/>
        <gene id="4586" protId="E3MMD1" geneId="Cre-col-130"/>
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        <gene id="5540" protId="E3MT15" geneId="CRE_15577"/>
        <gene id="5541" protId="E3MT14" geneId="CRE_15576"/>
        <gene id="5542" protId="E3NPN4" geneId="CRE_24311"/>
        <gene id="5543" protId="E3N117" geneId="CRE_12930"/>
        <gene id="5544" protId="E3NE87" geneId="CRE_05219"/>
        <gene id="5545" protId="E3MYN1" geneId="CRE_03351"/>
        <gene id="5546" protId="E3NCG7" geneId="CRE_20010"/>
        <gene id="5547" protId="E3NE88" geneId="CRE_05220"/>
        <gene id="5548" protId="E3NFA2" geneId="CRE_16364"/>
        <gene id="5549" protId="E3NFA3" geneId="CRE_16365"/>
        <gene id="5550" protId="E3NCG5" geneId="CRE_20008"/>
        <gene id="5551" protId="E3NCG6" geneId="CRE_20009"/>
        <gene id="5552" protId="E3MHA7" geneId="CRE_23545"/>
        <gene id="5553" protId="E3N8X7" geneId="CRE_21480"/>
        <gene id="5554" protId="E3NA33" geneId="CRE_29009"/>
        <gene id="5555" protId="E3MYN2" geneId="CRE_03335"/>
        <gene id="5556" protId="E3NFA4" geneId="CRE_16366"/>
        <gene id="5557" protId="E3NT87" geneId="CRE_10764"/>
        <gene id="5558" protId="E3LIY7" geneId="CRE_09040"/>
        <gene id="5559" protId="E3NX50" geneId="CRE_13248"/>
        <gene id="5560" protId="E3LIY5" geneId="CRE_09458"/>
        <gene id="5561" protId="E3NPN5" geneId="CRE_24312"/>
        <gene id="5562" protId="E3NNE3" geneId="CRE_24302"/>
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        <gene id="5564" protId="E3N1W0" geneId="CRE_14836"/>
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        <gene id="5567" protId="E3NHX2" geneId="CRE_02670"/>
        <gene id="5568" protId="E3NQQ7" geneId="CRE_27961"/>
        <gene id="5569" protId="E3NQZ1" geneId="CRE_03557"/>
        <gene id="5570" protId="E3NIA6" geneId="CRE_04354"/>
        <gene id="5571" protId="E3NRZ3" geneId="CRE_01486"/>
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        <gene id="5573" protId="E3N1V4" geneId="CRE_14830"/>
        <gene id="5574" protId="E3LHY5" geneId="CRE_08865"/>
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        <gene id="5577" protId="E3NQQ8" geneId="CRE_27962"/>
        <gene id="5578" protId="E3NVX7" geneId="CRE_22270"/>
        <gene id="5579" protId="E3LK31" geneId="CRE_18410"/>
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        <gene id="5581" protId="E3N1W3" geneId="CRE_14838"/>
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        <gene id="5583" protId="E3N1W4" geneId="CRE_14839"/>
        <gene id="5586" protId="E3NNI9" geneId="CRE_03532"/>
        <gene id="5587" protId="E3M5E2" geneId="CRE_11074"/>
        <gene id="5588" protId="E3MR80" geneId="CRE_13481"/>
        <gene id="5589" protId="E3NTS9" geneId="CRE_07957"/>
        <gene id="5592" protId="E3LVW5" geneId="CRE_29596"/>
        <gene id="5594" protId="E3N381" geneId="CRE_22564"/>
        <gene id="5595" protId="E3LEV0" geneId="CRE_00384"/>
        <gene id="5597" protId="E3LUW1" geneId="CRE_29857"/>
        <gene id="5599" protId="E3LZT9" geneId="CRE_05535"/>
        <gene id="5601" protId="E3NLN1" geneId="CRE_20609"/>
        <gene id="5602" protId="E3NQS3" geneId="CRE_06221"/>
        <gene id="5604" protId="E3LTC6" geneId="Cre-cri-3"/>
        <gene id="5606" protId="E3NEU4" geneId="Cre-dcap-1"/>
        <gene id="5608" protId="E3NVV9" geneId="CRE_12452"/>
        <gene id="5610" protId="E3M9I6" geneId="CRE_14559"/>
        <gene id="5611" protId="E3M9I2" geneId="CRE_14556"/>
        <gene id="5612" protId="E3M9I3" geneId="CRE_14557"/>
        <gene id="5613" protId="E3M9I8" geneId="CRE_14560"/>
        <gene id="5614" protId="E3N708" geneId="CRE_12238"/>
        <gene id="5615" protId="E3M9I9" geneId="CRE_14561"/>
        <gene id="5616" protId="E3M9G6" geneId="CRE_14544"/>
        <gene id="5617" protId="E3M9I4" geneId="CRE_14558"/>
        <gene id="5618" protId="E3M9G2" geneId="CRE_14670"/>
        <gene id="5619" protId="E3M9S1" geneId="CRE_14597"/>
        <gene id="5620" protId="E3M9A7" geneId="CRE_14514"/>
        <gene id="5621" protId="E3M9F9" geneId="CRE_14541"/>
        <gene id="5622" protId="E3M9A5" geneId="CRE_14512"/>
        <gene id="5623" protId="E3M9A6" geneId="CRE_14513"/>
        <gene id="5624" protId="E3M9G3" geneId="CRE_14671"/>
        <gene id="5625" protId="E3M9G1" geneId="CRE_14669"/>
        <gene id="5626" protId="E3M9G0" geneId="CRE_14542"/>
        <gene id="5628" protId="E3NTT8" geneId="CRE_16569"/>
        <gene id="5629" protId="E3NSL5" geneId="CRE_22242"/>
        <gene id="5630" protId="E3NTJ2" geneId="CRE_13218"/>
        <gene id="5632" protId="E3NWY6" geneId="CRE_18397"/>
        <gene id="5635" protId="E3NWE4" geneId="CRE_06278"/>
        <gene id="5638" protId="E3M4A9" geneId="Cre-ndx-3"/>
        <gene id="5640" protId="E3NL23" geneId="Cre-tomm-22"/>
        <gene id="5642" protId="E3NS64" geneId="CRE_26893"/>
        <gene id="5643" protId="E3NDM8" geneId="CRE_27869"/>
        <gene id="5653" protId="E3MV54" geneId="CRE_20852"/>
        <gene id="5654" protId="E3LJ80" geneId="Cre-phy-3"/>
        <gene id="5655" protId="E3N6H1" geneId="CRE_06013"/>
        <gene id="5656" protId="E3N6H0" geneId="Cre-phy-4"/>
        <gene id="5658" protId="E3MZB9" geneId="CRE_05973"/>
        <gene id="5659" protId="E3MSY1" geneId="CRE_15556"/>
        <gene id="5662" protId="E3MI94" geneId="CRE_00969"/>
        <gene id="5664" protId="E3MR69" geneId="Cre-nbet-1"/>
        <gene id="5666" protId="E3LPK0" geneId="Cre-mdt-6"/>
        <gene id="5668" protId="E3N076" geneId="Cre-tpk-1"/>
        <gene id="5670" protId="E3NKP6" geneId="CRE_06185"/>
        <gene id="5672" protId="E3MT06" geneId="CRE_15506"/>
        <gene id="5673" protId="E3N086" geneId="CRE_12158"/>
        <gene id="5675" protId="E3NWQ4" geneId="CRE_30646"/>
        <gene id="5676" protId="E3LVK9" geneId="Cre-dhfr-1"/>
        <gene id="5678" protId="E3NLQ3" geneId="CRE_24866"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="C.remanei" link="http://www.uniprot.org/taxonomy/31234"/>
    </notes>
  </species>
  <species name="Penicillium digitatum " NCBITaxId="1170229">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="4" protId="K9FM04" geneId="PDIG_62620"/>
        <gene id="6" protId="K9GSE1" geneId="PDIG_14100"/>
        <gene id="8" protId="K9G6A4" geneId="PDIG_14650"/>
        <gene id="10" protId="K9GMT8" geneId="PDIG_23780"/>
        <gene id="12" protId="K9G6H4" geneId="PDIG_56720"/>
        <gene id="14" protId="K9GE03" geneId="PDIG_40520"/>
        <gene id="16" protId="K9FHW9" geneId="PDIG_66780"/>
        <gene id="18" protId="K9G5G2" geneId="PDIG_68210"/>
        <gene id="20" protId="K9FRT2" geneId="PDIG_83970"/>
        <gene id="22" protId="K9GQI6" geneId="PDIG_18090"/>
        <gene id="24" protId="K9FFF0" geneId="PDIG_69600"/>
        <gene id="26" protId="K9GRN0" geneId="PDIG_23790"/>
        <gene id="28" protId="K9FFP7" geneId="PDIG_76140"/>
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    <notes>
      <additionalInformation abbreviation="P.digitatum" link="http://www.uniprot.org/taxonomy/1170229"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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