<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1254" inparalogs="3322"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="C.lusitaniae" link="http://www.uniprot.org/taxonomy/306902"/>
    </notes>
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        <gene id="2965" protId="H3DZJ7" geneId="WBGene00092402"/>
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        <gene id="2967" protId="H3ENS2" geneId="WBGene00100973"/>
        <gene id="2969" protId="H3FK02" geneId="WBGene00112161"/>
        <gene id="2971" protId="H3FSI4" geneId="WBGene00114810"/>
        <gene id="2973" protId="H3EVL1" geneId="WBGene00103407"/>
        <gene id="2974" protId="H3E2Z3" geneId="uncharacterized_H3E2Z3"/>
        <gene id="2976" protId="H3DYU0" geneId="WBGene00092142"/>
        <gene id="2978" protId="H3EGJ9" geneId="uncharacterized_H3EGJ9"/>
        <gene id="2980" protId="H3EWZ1" geneId="WBGene00103900"/>
        <gene id="2982" protId="H3EIE5" geneId="WBGene00099069"/>
        <gene id="2983" protId="H3EWX0" geneId="uncharacterized_H3EWX0"/>
        <gene id="2984" protId="H3ER96" geneId="uncharacterized_H3ER96"/>
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        <gene id="2987" protId="H3DTD3" geneId="WBGene00090218"/>
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        <gene id="2999" protId="H3G222" geneId="WBGene00118186"/>
        <gene id="3001" protId="H3EJG9" geneId="uncharacterized_H3EJG9"/>
        <gene id="3003" protId="H3EEE8" geneId="uncharacterized_H3EEE8"/>
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        <gene id="3007" protId="H3FJ10" geneId="WBGene00111814"/>
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        <gene id="3028" protId="H3E2D0" geneId="WBGene00093395"/>
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        <gene id="3080" protId="H3FTK1" geneId="WBGene00115180"/>
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        <gene id="3086" protId="H3FNH2" geneId="WBGene00113388"/>
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        <gene id="3090" protId="H3F7J1" geneId="WBGene00107694"/>
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        <gene id="3092" protId="H3EAQ8" geneId="WBGene00096356"/>
        <gene id="3093" protId="H3FSV6" geneId="WBGene00114932"/>
        <gene id="3095" protId="H3EIP8" geneId="WBGene00099172"/>
        <gene id="3096" protId="H3EKR6" geneId="WBGene00099906"/>
        <gene id="3098" protId="H3DWV0" geneId="WBGene00091446"/>
        <gene id="3100" protId="H3EHQ2" geneId="WBGene00098823"/>
        <gene id="3102" protId="H3FSW5" geneId="WBGene00114941"/>
        <gene id="3104" protId="H3FQN7" geneId="uncharacterized_H3FQN7"/>
        <gene id="3106" protId="H3FNC8" geneId="WBGene00113342"/>
        <gene id="3108" protId="H3FVM3" geneId="WBGene00115910"/>
        <gene id="3110" protId="H3FZV4" geneId="WBGene00117407"/>
        <gene id="3112" protId="H3FUJ5" geneId="WBGene00115529"/>
        <gene id="3113" protId="H3FUH3" geneId="WBGene00115507"/>
        <gene id="3114" protId="H3FW85" geneId="uncharacterized_H3FW85"/>
        <gene id="3115" protId="H3FUH4" geneId="WBGene00115508"/>
        <gene id="3116" protId="H3FW83" geneId="uncharacterized_H3FW83"/>
        <gene id="3117" protId="H3FB98" geneId="WBGene00109036"/>
        <gene id="3119" protId="H3FY16" geneId="WBGene00116764"/>
        <gene id="3120" protId="H3FY15" geneId="uncharacterized_H3FY15"/>
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        <gene id="3124" protId="H3DZB5" geneId="WBGene00092318"/>
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        <gene id="3141" protId="H3FIA0" geneId="WBGene00111553"/>
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        <gene id="3149" protId="H3FJF1" geneId="WBGene00111956"/>
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        <gene id="3167" protId="H3EVQ4" geneId="WBGene00103455"/>
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        <gene id="3171" protId="H3FN21" geneId="WBGene00113235"/>
        <gene id="3172" protId="H3FX09" geneId="uncharacterized_H3FX09"/>
        <gene id="3174" protId="H3DSG9" geneId="uncharacterized_H3DSG9"/>
        <gene id="3176" protId="H3DW11" geneId="WBGene00091152"/>
        <gene id="3178" protId="H3EDJ2" geneId="WBGene00097348"/>
        <gene id="3180" protId="H3FZU7" geneId="WBGene00117400"/>
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        <gene id="3191" protId="H3DRN9" geneId="WBGene00089624"/>
        <gene id="3192" protId="H3EC57" geneId="uncharacterized_H3EC57"/>
        <gene id="3193" protId="H3FTS1" geneId="WBGene00115252"/>
        <gene id="3194" protId="H3E8A8" geneId="WBGene00095502"/>
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        <gene id="3271" protId="H3FSD2" geneId="WBGene00114758"/>
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        <gene id="3276" protId="H3FST4" geneId="WBGene00114910"/>
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        <gene id="3284" protId="H3EGX3" geneId="uncharacterized_H3EGX3"/>
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        <gene id="3288" protId="H3EYZ6" geneId="WBGene00104615"/>
        <gene id="3290" protId="H3G1S6" geneId="uncharacterized_H3G1S6"/>
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        <gene id="3294" protId="H3FS80" geneId="WBGene00114706"/>
        <gene id="3297" protId="H3EEN8" geneId="uncharacterized_H3EEN8"/>
        <gene id="3299" protId="H3DYJ0" geneId="WBGene00092042"/>
        <gene id="3301" protId="H3F9B4" geneId="WBGene00108326"/>
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        <gene id="3304" protId="H3DSK6" geneId="WBGene00089941"/>
        <gene id="3305" protId="H3FHR2" geneId="WBGene00111363"/>
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        <gene id="3310" protId="H3FSB4" geneId="WBGene00114740"/>
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        <gene id="3313" protId="H3EQU6" geneId="WBGene00101705"/>
        <gene id="3315" protId="H3FRK2" geneId="WBGene00114475"/>
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      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="P.pacificus" link="http://www.uniprot.org/taxonomy/54126"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="1514"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="1273"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="1103"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="9">
        <score id="inparalog" value="0.654"/>
      </geneRef>
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      <score id="bit" value="1083"/>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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      <score id="bit" value="1081"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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      <score id="bit" value="1069"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="16">
        <score id="inparalog" value="0.624"/>
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      <geneRef id="17">
        <score id="inparalog" value="0.194"/>
      </geneRef>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="20">
        <score id="inparalog" value="0.154"/>
      </geneRef>
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      <score id="bit" value="1050"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="22">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="1032"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="24">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="1009"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="28">
        <score id="inparalog" value="0.444"/>
      </geneRef>
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        <score id="bootstrap" value="0.99"/>
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