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  <notes>
    <stats ortholog_groups="1985" inparalogs="4764"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ciona intestinalis" NCBITaxId="7719">
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    <notes>
      <additionalInformation abbreviation="C.intestinalis" link="http://www.uniprot.org/taxonomy/7719"/>
    </notes>
  </species>
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    <notes>
      <additionalInformation abbreviation="M.larici-populina" link="http://www.uniprot.org/taxonomy/747676"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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