<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="2171" inparalogs="6448"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Caenorhabditis brenneri " NCBITaxId="135651">
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    <notes>
      <additionalInformation abbreviation="C.brenneri" link="http://www.uniprot.org/taxonomy/135651"/>
    </notes>
  </species>
  <species name="Polysphondylium pallidum " NCBITaxId="13642">
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        <gene id="6071" protId="D3BR32" geneId="PPL_10436"/>
        <gene id="6072" protId="D3AXT5" geneId="PPL_00992"/>
        <gene id="6073" protId="D3B4B7" geneId="PPL_03239"/>
        <gene id="6075" protId="D3BK07" geneId="PPL_08888"/>
        <gene id="6076" protId="D3B5A2" geneId="PPL_03615"/>
        <gene id="6077" protId="D3BVN4" geneId="PPL_00035"/>
        <gene id="6080" protId="D3BL59" geneId="PPL_09291"/>
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        <gene id="6083" protId="D3B9X2" geneId="PPL_05342"/>
        <gene id="6086" protId="D3BNC8" geneId="PPL_09539"/>
        <gene id="6088" protId="D3BBS6" geneId="abiA"/>
        <gene id="6090" protId="D3B455" geneId="PPL_03176"/>
        <gene id="6092" protId="D3BT41" geneId="PPL_11333"/>
        <gene id="6094" protId="D3BE21" geneId="pfdn4"/>
        <gene id="6100" protId="D3BDY9" geneId="cmbl"/>
        <gene id="6102" protId="D3B2P0" geneId="fam32"/>
        <gene id="6104" protId="D3BDZ5" geneId="tom40"/>
        <gene id="6106" protId="D3BEI4" geneId="PPL_07146"/>
        <gene id="6108" protId="D3BCT6" geneId="rabif"/>
        <gene id="6110" protId="D3BUA1" geneId="PPL_11720"/>
        <gene id="6116" protId="D3AWN1" geneId="PPL_00507"/>
        <gene id="6121" protId="D3BFP6" geneId="PPL_06781"/>
        <gene id="6122" protId="D3B398" geneId="PPL_02864"/>
        <gene id="6127" protId="D3B0G1" geneId="PPL_01778"/>
        <gene id="6130" protId="D3BEB8" geneId="PPL_07074"/>
        <gene id="6131" protId="D3BLB7" geneId="PPL_09349"/>
        <gene id="6132" protId="D3B9V4" geneId="PPL_05252"/>
        <gene id="6133" protId="D3B3S1" geneId="PPL_03041"/>
        <gene id="6135" protId="D3BBK5" geneId="sdhC"/>
        <gene id="6137" protId="D3BQM2" geneId="rpc9"/>
        <gene id="6139" protId="D3B0A5" geneId="PPL_01721"/>
        <gene id="6158" protId="D3BNP9" geneId="PPL_09752"/>
        <gene id="6162" protId="D3BNA4" geneId="PPL_09515"/>
        <gene id="6165" protId="D3B4M2" geneId="sybB"/>
        <gene id="6167" protId="D3BGM2" geneId="PPL_07674"/>
        <gene id="6168" protId="D3B549" geneId="gtf2e2"/>
        <gene id="6171" protId="D3BIF7" geneId="ssr2"/>
        <gene id="6173" protId="D3BPJ7" geneId="rad1"/>
        <gene id="6175" protId="D3BN74" geneId="PPL_09485"/>
        <gene id="6188" protId="D3BRH4" geneId="PPL_10585"/>
        <gene id="6189" protId="D3BRH0" geneId="PPL_10581"/>
        <gene id="6190" protId="D3BHZ0" geneId="PPL_08358"/>
        <gene id="6191" protId="D3BIY7" geneId="PPL_08222"/>
        <gene id="6192" protId="D3B6S8" geneId="PPL_03835"/>
        <gene id="6193" protId="D3BNU5" geneId="PPL_09616"/>
        <gene id="6194" protId="D3B944" geneId="PPL_04988"/>
        <gene id="6195" protId="D3BFF2" geneId="PPL_06686"/>
        <gene id="6196" protId="D3B8V8" geneId="PPL_04901"/>
        <gene id="6197" protId="D3B939" geneId="PPL_04983"/>
        <gene id="6198" protId="D3B935" geneId="PPL_04979"/>
        <gene id="6199" protId="D3BJ19" geneId="PPL_08256"/>
        <gene id="6200" protId="D3BTB2" geneId="PPL_11405"/>
        <gene id="6201" protId="D3BHT3" geneId="PPL_08297"/>
        <gene id="6202" protId="D3B8Z5" geneId="PPL_04939"/>
        <gene id="6203" protId="D3B4Q8" geneId="PPL_03383"/>
        <gene id="6204" protId="D3B948" geneId="PPL_04992"/>
        <gene id="6205" protId="D3BHW8" geneId="PPL_08336"/>
        <gene id="6206" protId="D3B5H4" geneId="PPL_03912"/>
        <gene id="6207" protId="D3B947" geneId="PPL_04991"/>
        <gene id="6208" protId="D3BFF3" geneId="PPL_06687"/>
        <gene id="6209" protId="D3B964" geneId="PPL_05008"/>
        <gene id="6210" protId="D3B8S2" geneId="PPL_04865"/>
        <gene id="6211" protId="D3B8Y9" geneId="PPL_04933"/>
        <gene id="6212" protId="D3B8Z1" geneId="PPL_04935"/>
        <gene id="6213" protId="D3B674" geneId="PPL_04165"/>
        <gene id="6214" protId="D3B8Y3" geneId="PPL_04927"/>
        <gene id="6215" protId="D3BIV6" geneId="PPL_08191"/>
        <gene id="6216" protId="D3BRL7" geneId="PPL_10628"/>
        <gene id="6217" protId="D3B8Q2" geneId="PPL_04845"/>
        <gene id="6218" protId="D3BG37" geneId="PPL_07488"/>
        <gene id="6219" protId="D3B8Y1" geneId="PPL_04925"/>
        <gene id="6220" protId="D3B8T1" geneId="PPL_04874"/>
        <gene id="6221" protId="D3B932" geneId="PPL_04976"/>
        <gene id="6222" protId="D3B927" geneId="PPL_04971"/>
        <gene id="6223" protId="D3B8U3" geneId="PPL_04886"/>
        <gene id="6224" protId="D3B6U3" geneId="PPL_03851"/>
        <gene id="6225" protId="D3BI02" geneId="PPL_08370"/>
        <gene id="6226" protId="D3B3G2" geneId="PPL_02930"/>
        <gene id="6227" protId="D3BHZ9" geneId="PPL_08367"/>
        <gene id="6228" protId="D3B8V1" geneId="PPL_04894"/>
        <gene id="6229" protId="D3BHP2" geneId="PPL_08047"/>
        <gene id="6230" protId="D3AYR2" geneId="PPL_01326"/>
        <gene id="6231" protId="D3B8X6" geneId="PPL_04919"/>
        <gene id="6232" protId="D3B924" geneId="PPL_04968"/>
        <gene id="6233" protId="D3BFG9" geneId="PPL_06703"/>
        <gene id="6234" protId="D3BHY3" geneId="PPL_08351"/>
        <gene id="6235" protId="D3B603" geneId="PPL_04091"/>
        <gene id="6236" protId="D3BMZ7" geneId="PPL_12571"/>
        <gene id="6237" protId="D3BG55" geneId="PPL_07506"/>
        <gene id="6238" protId="D3BEQ5" geneId="PPL_07220"/>
        <gene id="6239" protId="D3BR53" geneId="PPL_10457"/>
        <gene id="6240" protId="D3B2G0" geneId="PPL_02572"/>
        <gene id="6241" protId="D3BIM5" geneId="PPL_08104"/>
        <gene id="6242" protId="D3B898" geneId="PPL_04689"/>
        <gene id="6243" protId="D3B602" geneId="PPL_04090"/>
        <gene id="6244" protId="D3B8S8" geneId="PPL_04871"/>
        <gene id="6245" protId="D3BG65" geneId="PPL_07516"/>
        <gene id="6246" protId="D3B0R3" geneId="PPL_01880"/>
        <gene id="6247" protId="D3B8Z7" geneId="PPL_04941"/>
        <gene id="6248" protId="D3BG71" geneId="PPL_07522"/>
        <gene id="6249" protId="D3BLC4" geneId="PPL_09357"/>
        <gene id="6250" protId="D3BLG9" geneId="PPL_09403"/>
        <gene id="6251" protId="D3BLG4" geneId="PPL_09398"/>
        <gene id="6252" protId="D3B975" geneId="PPL_05019"/>
        <gene id="6253" protId="D3BHT2" geneId="PPL_08296"/>
        <gene id="6254" protId="D3BLD2" geneId="PPL_09366"/>
        <gene id="6255" protId="D3BUL9" geneId="PPL_11840"/>
        <gene id="6256" protId="D3BLA6" geneId="PPL_09338"/>
        <gene id="6257" protId="D3BFT8" geneId="PPL_07389"/>
        <gene id="6258" protId="D3BHX8" geneId="PPL_08346"/>
        <gene id="6259" protId="D3BG68" geneId="PPL_07519"/>
        <gene id="6260" protId="D3BGH9" geneId="PPL_07630"/>
        <gene id="6261" protId="D3BG69" geneId="PPL_07520"/>
        <gene id="6262" protId="D3AW41" geneId="PPL_00309"/>
        <gene id="6263" protId="D3B2B0" geneId="PPL_02519"/>
        <gene id="6264" protId="D3BP78" geneId="PPL_09841"/>
        <gene id="6265" protId="D3B911" geneId="PPL_04955"/>
        <gene id="6266" protId="D3BKZ0" geneId="PPL_09222"/>
        <gene id="6267" protId="D3BHS5" geneId="PPL_08289"/>
        <gene id="6268" protId="D3BKU6" geneId="PPL_09178"/>
        <gene id="6269" protId="D3BG24" geneId="PPL_07475"/>
        <gene id="6270" protId="D3B5L7" geneId="PPL_03955"/>
        <gene id="6271" protId="D3BSL3" geneId="PPL_10982"/>
        <gene id="6272" protId="D3B003" geneId="PPL_01617"/>
        <gene id="6275" protId="D3B3L9" geneId="cahA"/>
        <gene id="6277" protId="D3BH45" geneId="PPL_07847"/>
        <gene id="6278" protId="D3BA70" geneId="PPL_05445"/>
        <gene id="6280" protId="D3BI39" geneId="hbx10"/>
        <gene id="6282" protId="D3B3P7" geneId="acp1"/>
        <gene id="6284" protId="D3BFU3" geneId="atg12"/>
        <gene id="6286" protId="D3BM69" geneId="gtaL"/>
        <gene id="6290" protId="D3BR91" geneId="PPL_10496"/>
        <gene id="6291" protId="D3BDK1" geneId="PPL_06803"/>
        <gene id="6293" protId="D3BL89" geneId="PPL_09321"/>
        <gene id="6295" protId="D3BII5" geneId="PPL_08064"/>
        <gene id="6297" protId="D3BE48" geneId="drpp20"/>
        <gene id="6299" protId="D3BEC8" geneId="PPL_07085"/>
        <gene id="6301" protId="D3BEH5" geneId="PPL_07136"/>
        <gene id="6303" protId="D3BEM2" geneId="PPL_07186"/>
        <gene id="6304" protId="D3BB74" geneId="PPL_05260"/>
        <gene id="6305" protId="D3BJD8" geneId="PPL_08663"/>
        <gene id="6306" protId="D3B0R0" geneId="PPL_01877"/>
        <gene id="6307" protId="D3BBR5" geneId="PPL_05934"/>
        <gene id="6308" protId="D3BS58" geneId="PPL_10850"/>
        <gene id="6309" protId="D3BTH3" geneId="PPL_11467"/>
        <gene id="6310" protId="D3BUM3" geneId="PPL_11844"/>
        <gene id="6311" protId="D3BDS9" geneId="PPL_06882"/>
        <gene id="6312" protId="D3BSM9" geneId="PPL_10998"/>
        <gene id="6313" protId="D3BCY0" geneId="PPL_06358"/>
        <gene id="6314" protId="D3BBZ1" geneId="PPL_06011"/>
        <gene id="6315" protId="D3BR21" geneId="PPL_10424"/>
        <gene id="6316" protId="D3AXN4" geneId="PPL_00941"/>
        <gene id="6317" protId="D3BLH8" geneId="PPL_12355"/>
        <gene id="6318" protId="D3B5D2" geneId="PPL_03868"/>
        <gene id="6319" protId="D3BUZ8" geneId="PPL_11970"/>
        <gene id="6320" protId="D3BTK1" geneId="PPL_11497"/>
        <gene id="6321" protId="D3BSA2" geneId="PPL_10894"/>
        <gene id="6322" protId="D3BF97" geneId="PPL_06630"/>
        <gene id="6323" protId="D3BSE0" geneId="PPL_10907"/>
        <gene id="6324" protId="D3BLL5" geneId="PPL_12068"/>
        <gene id="6325" protId="D3BPY0" geneId="PPL_10024"/>
        <gene id="6326" protId="D3B5H3" geneId="PPL_03911"/>
        <gene id="6327" protId="D3B9Q8" geneId="PPL_05204"/>
        <gene id="6335" protId="D3AW78" geneId="PPL_00351"/>
        <gene id="6338" protId="D3BKL6" geneId="PPL_09098"/>
        <gene id="6340" protId="D3B712" geneId="PPL_04243"/>
        <gene id="6342" protId="D3AXS2" geneId="mocs2s"/>
        <gene id="6355" protId="D3BV06" geneId="PPL_11978"/>
        <gene id="6356" protId="D3BT17" geneId="PPL_11138"/>
        <gene id="6357" protId="D3BJN1" geneId="PPL_08759"/>
        <gene id="6360" protId="D3BFJ5" geneId="PPL_06729"/>
        <gene id="6363" protId="D3BEF4" geneId="PPL_07113"/>
        <gene id="6365" protId="D3B678" geneId="PPL_04169"/>
        <gene id="6379" protId="D3BNK1" geneId="PPL_09704"/>
        <gene id="6382" protId="D3BRF0" geneId="PPL_10560"/>
        <gene id="6383" protId="D3BCC4" geneId="PPL_06149"/>
        <gene id="6384" protId="D3BCC5" geneId="gtaC"/>
        <gene id="6385" protId="D3BSH7" geneId="gtaI"/>
        <gene id="6386" protId="D3BMK9" geneId="gtaK"/>
        <gene id="6390" protId="D3B1Z4" geneId="PPL_02319"/>
        <gene id="6391" protId="D3BR40" geneId="PPL_10444"/>
        <gene id="6395" protId="D3B7U5" geneId="PPL_04533"/>
        <gene id="6398" protId="D3BUL3" geneId="purB"/>
        <gene id="6407" protId="D3BCY1" geneId="PPL_06359"/>
        <gene id="6408" protId="D3BCY9" geneId="PPL_06367"/>
        <gene id="6412" protId="D3BUT0" geneId="PPL_11902"/>
        <gene id="6414" protId="D3BR20" geneId="PPL_10423"/>
        <gene id="6415" protId="D3BGG1" geneId="PPL_07612"/>
        <gene id="6418" protId="D3B6L7" geneId="PPL_03765"/>
        <gene id="6420" protId="D3BCP0" geneId="PPL_06266"/>
        <gene id="6422" protId="D3BUE5" geneId="PPL_11764"/>
        <gene id="6424" protId="D3BTX9" geneId="PPL_11239"/>
        <gene id="6426" protId="D3BKA6" geneId="timm10"/>
        <gene id="6429" protId="D3BJL5" geneId="PPL_08743"/>
        <gene id="6432" protId="D3AYJ9" geneId="PPL_01259"/>
        <gene id="6434" protId="D3BTS8" geneId="lyrm5"/>
        <gene id="6438" protId="D3BH47" geneId="PPL_07849"/>
        <gene id="6441" protId="D3B1N4" geneId="PPL_02208"/>
        <gene id="6442" protId="D3B729" geneId="PPL_04261"/>
        <gene id="6443" protId="D3B728" geneId="PPL_04260"/>
        <gene id="6444" protId="D3B706" geneId="PPL_04237"/>
        <gene id="6446" protId="D3BC50" geneId="udpB"/>
        <gene id="6448" protId="D3AXD0" geneId="PPL_00761"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="P.pallidum" link="http://www.uniprot.org/taxonomy/13642"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="0.988"/>
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      <geneRef id="5">
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.413"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.998"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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