<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="2008" inparalogs="6084"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Caenorhabditis brenneri " NCBITaxId="135651">
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    </database>
    <notes>
      <additionalInformation abbreviation="C.brenneri" link="http://www.uniprot.org/taxonomy/135651"/>
    </notes>
  </species>
  <species name="Macrophomina phaseolina " NCBITaxId="1126212">
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    </database>
    <notes>
      <additionalInformation abbreviation="M.phaseolina" link="http://www.uniprot.org/taxonomy/1126212"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="0.851"/>
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      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="3">
      <score id="bit" value="1820"/>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="7">
        <score id="inparalog" value="0.996"/>
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      <geneRef id="8">
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="4">
      <score id="bit" value="1743"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.398"/>
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      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.997"/>
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        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1219"/>
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        <score id="bootstrap" value="0.63"/>
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      <geneRef id="24">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.995"/>
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        <score id="inparalog" value="0.998"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="14">
      <score id="bit" value="1190"/>
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        <score id="bootstrap" value="1"/>
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