<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="180" inparalogs="647"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Caenorhabditis brenneri " NCBITaxId="135651">
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        <gene id="406" protId="G0N5N6" geneId="CAEBREN_32282"/>
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        <gene id="411" protId="G0MG82" geneId="Cbn-psd-1"/>
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        <gene id="414" protId="G0N608" geneId="CAEBREN_31544"/>
        <gene id="416" protId="G0MEL4" geneId="CAEBREN_16123"/>
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        <gene id="458" protId="G0NBT4" geneId="CAEBREN_14345"/>
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        <gene id="465" protId="G0MP84" geneId="tsfm-1"/>
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        <gene id="473" protId="G0NJU0" geneId="CAEBREN_09299"/>
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        <gene id="479" protId="G0NXA5" geneId="CAEBREN_00450"/>
        <gene id="480" protId="G0M6Z0" geneId="CAEBREN_17491"/>
        <gene id="483" protId="G0P4V6" geneId="CAEBREN_24295"/>
        <gene id="485" protId="G0M743" geneId="Cbn-aat-3"/>
        <gene id="486" protId="G0PAQ4" geneId="CAEBREN_16541"/>
        <gene id="487" protId="G0NRC2" geneId="CAEBREN_10959"/>
        <gene id="488" protId="G0NTW4" geneId="Cbn-aat-2"/>
        <gene id="489" protId="G0PLB0" geneId="CAEBREN_32009"/>
        <gene id="490" protId="G0NWB3" geneId="Cbn-aat-7"/>
        <gene id="491" protId="G0NIJ0" geneId="CAEBREN_18034"/>
        <gene id="492" protId="G0PKU1" geneId="CAEBREN_31730"/>
        <gene id="493" protId="G0PBM6" geneId="Cbn-aat-5"/>
        <gene id="494" protId="G0NM44" geneId="CAEBREN_28159"/>
        <gene id="496" protId="G0PC62" geneId="CAEBREN_15256"/>
        <gene id="497" protId="G0PG66" geneId="CAEBREN_31851"/>
        <gene id="499" protId="G0NG04" geneId="CAEBREN_03319"/>
        <gene id="500" protId="G0P903" geneId="CAEBREN_00038"/>
        <gene id="502" protId="G0P255" geneId="Cbn-rps-2"/>
        <gene id="504" protId="G0MES9" geneId="CAEBREN_05376"/>
        <gene id="506" protId="G0NRG1" geneId="CAEBREN_24859"/>
        <gene id="507" protId="G0N5L3" geneId="CAEBREN_03698"/>
        <gene id="509" protId="G0MKR8" geneId="CAEBREN_10910"/>
        <gene id="511" protId="G0P4V5" geneId="CAEBREN_24262"/>
        <gene id="513" protId="G0N2R3" geneId="Cbn-rps-3"/>
        <gene id="515" protId="G0P0V7" geneId="CAEBREN_13766"/>
        <gene id="516" protId="G0P0W2" geneId="CAEBREN_28585"/>
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        <gene id="520" protId="G0N4B2" geneId="CAEBREN_05202"/>
        <gene id="521" protId="G0MAW1" geneId="Cbn-nkat-3"/>
        <gene id="522" protId="G0MB65" geneId="Cbn-tatn-1"/>
        <gene id="524" protId="G0PLH3" geneId="CAEBREN_32085"/>
        <gene id="525" protId="G0MXY9" geneId="CAEBREN_16820"/>
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        <gene id="532" protId="G0NE56" geneId="Cbn-air-1"/>
        <gene id="533" protId="G0N913" geneId="CAEBREN_25185"/>
        <gene id="534" protId="G0MGP0" geneId="Cbn-sgk-1"/>
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        <gene id="536" protId="G0MER8" geneId="CAEBREN_18866"/>
        <gene id="537" protId="G0N475" geneId="CAEBREN_02234"/>
        <gene id="538" protId="G0MIM4" geneId="Cbn-air-2"/>
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        <gene id="540" protId="G0MQR1" geneId="CAEBREN_09843"/>
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        <gene id="543" protId="G0M7U5" geneId="CAEBREN_07219"/>
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        <gene id="605" protId="G0PI54" geneId="Cbn-pyp-1"/>
        <gene id="607" protId="G0M815" geneId="CAEBREN_19205"/>
        <gene id="608" protId="G0N8G4" geneId="CAEBREN_00370"/>
        <gene id="609" protId="G0PNA9" geneId="CAEBREN_28466"/>
        <gene id="610" protId="G0MWF8" geneId="Cbn-sek-1"/>
        <gene id="611" protId="G0NL05" geneId="Cbn-mek-1"/>
        <gene id="612" protId="G0NPW0" geneId="Cbn-mtk-1"/>
        <gene id="613" protId="G0MXB8" geneId="Cbn-nekl-3"/>
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        <gene id="615" protId="G0N8I6" geneId="CAEBREN_17831"/>
        <gene id="616" protId="G0P7Y8" geneId="CAEBREN_12137"/>
        <gene id="617" protId="G0NRW5" geneId="CAEBREN_29442"/>
        <gene id="618" protId="G0NP99" geneId="CAEBREN_28035"/>
        <gene id="619" protId="G0MND5" geneId="CAEBREN_24403"/>
        <gene id="620" protId="G0MYR8" geneId="CAEBREN_03988"/>
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        <gene id="622" protId="G0MFB8" geneId="CAEBREN_15330"/>
        <gene id="623" protId="G0NQ46" geneId="CAEBREN_18658"/>
        <gene id="624" protId="G0P182" geneId="CAEBREN_04583"/>
        <gene id="625" protId="G0P7Q8" geneId="CAEBREN_31125"/>
        <gene id="627" protId="G0NKH9" geneId="CAEBREN_10968"/>
        <gene id="628" protId="G0P5B4" geneId="CAEBREN_23803"/>
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        <gene id="634" protId="G0P4X0" geneId="CAEBREN_03067"/>
        <gene id="636" protId="G0NYL6" geneId="CAEBREN_01807"/>
        <gene id="638" protId="G0M7I3" geneId="CAEBREN_24272"/>
        <gene id="639" protId="G0N6J3" geneId="Cbn-set-23"/>
        <gene id="640" protId="G0PGZ3" geneId="CAEBREN_19232"/>
        <gene id="641" protId="G0PDU8" geneId="CAEBREN_00308"/>
        <gene id="642" protId="G0NIP3" geneId="CAEBREN_29762"/>
        <gene id="643" protId="G0NDW7" geneId="CAEBREN_22131"/>
        <gene id="644" protId="G0NDS0" geneId="Cbn-set-19"/>
        <gene id="646" protId="G0MKW4" geneId="CAEBREN_17231"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="C.brenneri" link="http://www.uniprot.org/taxonomy/135651"/>
    </notes>
  </species>
  <species name="Chlamydia trachomatis " NCBITaxId="272561">
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    <notes>
      <additionalInformation abbreviation="C.trachomatis" link="http://www.uniprot.org/taxonomy/272561"/>
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