<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="120" inparalogs="357"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Chloroflexus aurantiacus " NCBITaxId="324602">
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    <notes>
      <additionalInformation abbreviation="C.aurantiacus" link="http://www.uniprot.org/taxonomy/324602"/>
    </notes>
  </species>
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        <gene id="311" protId="L2GKN1" geneId="VICG_01516"/>
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        <gene id="313" protId="L2GMV1" geneId="VICG_00981"/>
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        <gene id="315" protId="L2GKB9" geneId="VICG_01862"/>
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        <gene id="319" protId="L2GPW2" geneId="VICG_00292"/>
        <gene id="321" protId="L2GKZ3" geneId="VICG_01849"/>
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        <gene id="324" protId="L2GLB9" geneId="VICG_01306"/>
        <gene id="325" protId="L2GLL2" geneId="VICG_01130"/>
        <gene id="326" protId="L2GPY1" geneId="VICG_00307"/>
        <gene id="327" protId="L2GNN1" geneId="VICG_00623"/>
        <gene id="329" protId="L2GLW2" geneId="VICG_01655"/>
        <gene id="331" protId="L2GJW3" geneId="VICG_01825"/>
        <gene id="332" protId="L2GPS1" geneId="VICG_00717"/>
        <gene id="333" protId="L2GNE5" geneId="VICG_00867"/>
        <gene id="335" protId="L2GL91" geneId="VICG_01648"/>
        <gene id="337" protId="L2GMD9" geneId="VICG_01562"/>
        <gene id="339" protId="L2GPD9" geneId="VICG_00006"/>
        <gene id="341" protId="L2GPB8" geneId="VICG_00785"/>
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        <gene id="348" protId="L2GMY1" geneId="VICG_00652"/>
        <gene id="349" protId="L2GM36" geneId="VICG_01603"/>
        <gene id="350" protId="L2GKQ1" geneId="VICG_01798"/>
        <gene id="351" protId="L2GJI7" geneId="VICG_01920"/>
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        <gene id="353" protId="L2GKB4" geneId="VICG_01857"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="V.corneae" link="http://www.uniprot.org/taxonomy/993615"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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