<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="690" inparalogs="3124"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Chloroflexus aurantiacus " NCBITaxId="324602">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="3" protId="A9WCJ8" geneId="carB"/>
        <gene id="5" protId="A9WHM1" geneId="Caur_3150"/>
        <gene id="9" protId="A9WHJ8" geneId="Caur_3126"/>
        <gene id="11" protId="A9WG08" geneId="Caur_2963"/>
        <gene id="13" protId="A9WBL0" geneId="Caur_1599"/>
        <gene id="15" protId="A9WHM2" geneId="Caur_3151"/>
        <gene id="16" protId="A9WIS0" geneId="Caur_2591"/>
        <gene id="18" protId="A9WHY9" geneId="Caur_2473"/>
        <gene id="22" protId="A9WH62" geneId="fusA"/>
        <gene id="24" protId="A9WFV9" geneId="dnaK"/>
        <gene id="26" protId="A9WH12" geneId="rpoB"/>
        <gene id="29" protId="A9WGU4" geneId="lepA"/>
        <gene id="31" protId="A9WD77" geneId="Caur_1827"/>
        <gene id="34" protId="A9WBV3" geneId="sucA"/>
        <gene id="37" protId="A9WEI4" geneId="Caur_2034"/>
        <gene id="39" protId="A9WJJ3" geneId="ileS"/>
        <gene id="41" protId="A9WAN3" geneId="Caur_0003"/>
        <gene id="44" protId="A9WDU4" geneId="Caur_1888"/>
        <gene id="47" protId="A9WA80" geneId="trpB"/>
        <gene id="49" protId="A9WGB5" geneId="lon"/>
        <gene id="51" protId="A9WGS4" geneId="atpD"/>
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        <gene id="63" protId="A9WG14" geneId="Caur_2969"/>
        <gene id="66" protId="A9WF68" geneId="ilvD"/>
        <gene id="68" protId="A9WE03" geneId="Caur_1947"/>
        <gene id="71" protId="A9WJN7" geneId="groL1"/>
        <gene id="72" protId="A9WFA3" geneId="groL2"/>
        <gene id="76" protId="A9WEJ7" geneId="pnp"/>
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        <gene id="81" protId="A9WIK7" geneId="Caur_1075"/>
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        <gene id="95" protId="A9WER4" geneId="Caur_0578"/>
        <gene id="97" protId="A9WJZ0" geneId="Caur_1212"/>
        <gene id="100" protId="A9WJ21" geneId="glpK"/>
        <gene id="102" protId="A9WKH8" geneId="Caur_3421"/>
        <gene id="104" protId="A9W9W7" geneId="Caur_1375"/>
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        <gene id="108" protId="A9WCM5" geneId="Caur_3809"/>
        <gene id="111" protId="A9WGX0" geneId="Caur_0830"/>
        <gene id="113" protId="A9WIW3" geneId="fhs"/>
        <gene id="115" protId="Q8VNW3" geneId="hppA"/>
        <gene id="120" protId="A9WHN1" geneId="ppc"/>
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        <gene id="129" protId="A9WIR4" geneId="Caur_2585"/>
        <gene id="134" protId="A9WJ75" geneId="pyrG"/>
        <gene id="137" protId="A9WGP6" geneId="infB"/>
        <gene id="139" protId="A9WK21" geneId="Caur_1244"/>
        <gene id="141" protId="A9WKE4" geneId="pgk"/>
        <gene id="144" protId="A9WFI8" geneId="Caur_0686"/>
        <gene id="146" protId="A9WIV3" geneId="Caur_2624"/>
        <gene id="148" protId="A9WI27" geneId="Caur_2512"/>
        <gene id="151" protId="A9WIS7" geneId="hemL"/>
        <gene id="153" protId="A9WDD3" geneId="Caur_3875"/>
        <gene id="154" protId="A9WI85" geneId="Caur_3182"/>
        <gene id="157" protId="A9WFT9" geneId="pdxS"/>
        <gene id="159" protId="A9WC24" geneId="Caur_0163"/>
        <gene id="163" protId="A9WBL2" geneId="Caur_1601"/>
        <gene id="166" protId="A9WGQ3" geneId="metK"/>
        <gene id="172" protId="A9WF95" geneId="Caur_2878"/>
        <gene id="174" protId="A9WCM4" geneId="eno"/>
        <gene id="179" protId="A9WFU2" geneId="Caur_2233"/>
        <gene id="181" protId="A9WK04" geneId="lysS"/>
        <gene id="183" protId="A9WA59" geneId="Caur_3557"/>
        <gene id="186" protId="A9WEJ4" geneId="Caur_2044"/>
        <gene id="189" protId="A9WCW3" geneId="Caur_0280"/>
        <gene id="193" protId="A9WEB6" geneId="secA"/>
        <gene id="195" protId="A9WFR0" geneId="ribBA"/>
        <gene id="199" protId="A9WC90" geneId="Caur_0230"/>
        <gene id="201" protId="A9WJB9" geneId="Caur_1166"/>
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        <gene id="204" protId="A9WEM0" geneId="Caur_2070"/>
        <gene id="209" protId="A9WH03" geneId="carA"/>
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        <gene id="214" protId="A9WDR5" geneId="Caur_0421"/>
        <gene id="216" protId="A9W9T3" geneId="Caur_1341"/>
        <gene id="222" protId="A9WDV1" geneId="Caur_1895"/>
        <gene id="225" protId="A9WE57" geneId="glmS"/>
        <gene id="227" protId="A9WAC7" geneId="Caur_1458"/>
        <gene id="230" protId="A9WD90" geneId="cysS"/>
        <gene id="233" protId="A9WJ72" geneId="Caur_1119"/>
        <gene id="236" protId="A9WEK8" geneId="purH"/>
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        <gene id="247" protId="A9WI58" geneId="glyA"/>
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        <gene id="265" protId="A9WJQ6" geneId="Caur_3336"/>
        <gene id="270" protId="A9WA77" geneId="Caur_1408"/>
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        <gene id="276" protId="A9WDR3" geneId="Caur_0419"/>
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        <gene id="279" protId="A9WJ70" geneId="Caur_1116"/>
        <gene id="286" protId="A9WAX8" geneId="Caur_1540"/>
        <gene id="290" protId="A9WBE1" geneId="Caur_0094"/>
        <gene id="292" protId="A9WDY8" geneId="hisC"/>
        <gene id="294" protId="A9WA70" geneId="Caur_1401"/>
        <gene id="296" protId="A9WJZ5" geneId="Caur_1217"/>
        <gene id="305" protId="O52394" geneId="recA"/>
        <gene id="307" protId="A9WG65" geneId="ftsZ"/>
        <gene id="310" protId="A9WBV5" geneId="Caur_3729"/>
        <gene id="314" protId="A9WHR8" geneId="Caur_0954"/>
        <gene id="317" protId="A9WE37" geneId="Caur_0447"/>
        <gene id="319" protId="A9WDZ7" geneId="purA"/>
        <gene id="322" protId="A9WGM9" geneId="Caur_2352"/>
        <gene id="324" protId="A9WEM2" geneId="Caur_2840"/>
        <gene id="327" protId="A9WHV7" geneId="serC"/>
        <gene id="329" protId="A9WII1" geneId="Caur_1049"/>
        <gene id="331" protId="A9WAR7" geneId="leuB"/>
        <gene id="333" protId="A9WED2" geneId="Caur_1979"/>
        <gene id="334" protId="A9WFC2" geneId="Caur_2907"/>
        <gene id="337" protId="A9WI34" geneId="aroC"/>
        <gene id="340" protId="A9WEM4" geneId="Caur_2842"/>
        <gene id="348" protId="A9WGJ7" geneId="aspS"/>
        <gene id="350" protId="A9WFK3" geneId="Caur_0702"/>
        <gene id="352" protId="A9WEX0" geneId="dnaJ"/>
        <gene id="354" protId="A9WDT2" geneId="hflX"/>
        <gene id="356" protId="A9WDV3" geneId="Caur_1897"/>
        <gene id="358" protId="A9WE29" geneId="Caur_1973"/>
        <gene id="362" protId="A9WBL1" geneId="Caur_1600"/>
        <gene id="366" protId="A9WHK0" geneId="Caur_3128"/>
        <gene id="369" protId="A9WH11" geneId="rpoC"/>
        <gene id="371" protId="A9WAX6" geneId="Caur_1538"/>
        <gene id="373" protId="A9WGJ1" geneId="Caur_2314"/>
        <gene id="375" protId="A9W9Z4" geneId="Caur_3492"/>
        <gene id="378" protId="A9WIB9" geneId="Caur_3220"/>
        <gene id="381" protId="A9WG54" geneId="Caur_0737"/>
        <gene id="383" protId="A9WKM1" geneId="metG"/>
        <gene id="385" protId="A9WCD8" geneId="gatA"/>
        <gene id="387" protId="A9WAB8" geneId="Caur_1449"/>
        <gene id="389" protId="A9WHW6" geneId="Caur_1002"/>
        <gene id="393" protId="A9WIR9" geneId="acsF"/>
        <gene id="395" protId="A9WFA0" geneId="Caur_2885"/>
        <gene id="459" protId="A9WED7" geneId="nuoD1"/>
        <gene id="460" protId="A9WFB4" geneId="nuoD2"/>
        <gene id="463" protId="A9WKL7" geneId="mnmG"/>
        <gene id="465" protId="A9WAA9" geneId="Caur_1440"/>
        <gene id="467" protId="A9WFR5" geneId="Caur_2206"/>
        <gene id="472" protId="A9WFQ6" geneId="prs"/>
        <gene id="476" protId="A9WBX3" geneId="Caur_3747"/>
        <gene id="477" protId="A9WH06" geneId="Caur_0868"/>
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        <gene id="481" protId="A9WDH5" geneId="Caur_3917"/>
        <gene id="483" protId="A9WGN2" geneId="Caur_2355"/>
        <gene id="485" protId="A9WG15" geneId="gatB"/>
        <gene id="487" protId="A9WHF7" geneId="Caur_3084"/>
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        <gene id="499" protId="A9WDE7" geneId="Caur_3889"/>
        <gene id="501" protId="A9WFB7" geneId="Caur_2902"/>
        <gene id="503" protId="A9WAY6" geneId="Caur_1548"/>
        <gene id="515" protId="A9WFM9" geneId="Caur_0729"/>
        <gene id="517" protId="A9WJS0" geneId="argJ"/>
        <gene id="519" protId="A9WEW0" geneId="purD"/>
        <gene id="521" protId="A9WH69" geneId="rplB"/>
        <gene id="523" protId="A9WEL6" geneId="Caur_2066"/>
        <gene id="527" protId="A9WBV2" geneId="Caur_3726"/>
        <gene id="528" protId="A9WCB7" geneId="Caur_1691"/>
        <gene id="531" protId="A9WE30" geneId="Caur_1974"/>
        <gene id="533" protId="A9WE19" geneId="Caur_1963"/>
        <gene id="535" protId="A9WGQ4" geneId="ahcY"/>
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        <gene id="559" protId="A9WKH9" geneId="Caur_3422"/>
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    <notes>
      <additionalInformation abbreviation="C.aurantiacus" link="http://www.uniprot.org/taxonomy/324602"/>
    </notes>
  </species>
  <species name="Solanum tuberosum " NCBITaxId="4113">
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    <notes>
      <additionalInformation abbreviation="S.tuberosum" link="http://www.uniprot.org/taxonomy/4113"/>
    </notes>
  </species>
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