<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="503" inparalogs="1669"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Chloroflexus aurantiacus " NCBITaxId="324602">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
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        <gene id="5" protId="A9WI23" geneId="Caur_2508"/>
        <gene id="7" protId="A9WCJ8" geneId="carB"/>
        <gene id="10" protId="A9WFV9" geneId="dnaK"/>
        <gene id="12" protId="A9WH07" geneId="Caur_0869"/>
        <gene id="15" protId="A9WJF0" geneId="valS"/>
        <gene id="18" protId="A9WEI4" geneId="Caur_2034"/>
        <gene id="20" protId="A9WJJ3" geneId="ileS"/>
        <gene id="22" protId="A9WGU4" geneId="lepA"/>
        <gene id="24" protId="A9WGK8" geneId="pckG"/>
        <gene id="27" protId="A9WBV3" geneId="sucA"/>
        <gene id="30" protId="A9WJZ0" geneId="Caur_1212"/>
        <gene id="32" protId="A9WH57" geneId="Caur_2360"/>
        <gene id="34" protId="A9WGB5" geneId="lon"/>
        <gene id="36" protId="A9WAN3" geneId="Caur_0003"/>
        <gene id="38" protId="A9WH62" geneId="fusA"/>
        <gene id="40" protId="A9WGS4" geneId="atpD"/>
        <gene id="43" protId="A9WER4" geneId="Caur_0578"/>
        <gene id="46" protId="A9WGS6" geneId="atpA"/>
        <gene id="48" protId="A9WCR2" geneId="alaS"/>
        <gene id="51" protId="A9WJN7" geneId="groL1"/>
        <gene id="52" protId="A9WFA3" geneId="groL2"/>
        <gene id="54" protId="A9WIW3" geneId="fhs"/>
        <gene id="57" protId="A9WAN2" geneId="Caur_0002"/>
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        <gene id="63" protId="A9W9W7" geneId="Caur_1375"/>
        <gene id="65" protId="A9WDH2" geneId="Caur_3914"/>
        <gene id="67" protId="A9WK84" geneId="leuS"/>
        <gene id="69" protId="A9WKF5" geneId="Caur_2832"/>
        <gene id="70" protId="A9W9X0" geneId="Caur_1378"/>
        <gene id="72" protId="A9WJW3" geneId="Caur_3394"/>
        <gene id="74" protId="A9WJ75" geneId="pyrG"/>
        <gene id="77" protId="A9WFP3" geneId="tuf1"/>
        <gene id="79" protId="A9WBL2" geneId="Caur_1601"/>
        <gene id="81" protId="A9WA30" geneId="Caur_3528"/>
        <gene id="86" protId="A9WGJ7" geneId="aspS"/>
        <gene id="88" protId="A9WK21" geneId="Caur_1244"/>
        <gene id="90" protId="A9WEJ7" geneId="pnp"/>
        <gene id="92" protId="A9WDF2" geneId="Caur_3894"/>
        <gene id="94" protId="A9WEJ0" geneId="ftsH"/>
        <gene id="98" protId="A9WKL7" geneId="mnmG"/>
        <gene id="100" protId="A9WCM4" geneId="eno"/>
        <gene id="105" protId="A9WJR8" geneId="argH"/>
        <gene id="107" protId="A9WBL0" geneId="Caur_1599"/>
        <gene id="109" protId="A9WF95" geneId="Caur_2878"/>
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        <gene id="114" protId="A9W9U8" geneId="Caur_1356"/>
        <gene id="116" protId="A9WF39" geneId="Caur_2142"/>
        <gene id="118" protId="A9WE57" geneId="glmS"/>
        <gene id="120" protId="A9WI27" geneId="Caur_2512"/>
        <gene id="122" protId="A9WJD3" geneId="htpG"/>
        <gene id="129" protId="A9WDR5" geneId="Caur_0421"/>
        <gene id="131" protId="A9WHT8" geneId="hutH"/>
        <gene id="133" protId="A9WJQ6" geneId="Caur_3336"/>
        <gene id="139" protId="A9WFB4" geneId="nuoD2"/>
        <gene id="141" protId="A9WAB2" geneId="Caur_1443"/>
        <gene id="145" protId="A9WI58" geneId="glyA"/>
        <gene id="148" protId="A9WK04" geneId="lysS"/>
        <gene id="150" protId="A9WJX4" geneId="thrS"/>
        <gene id="154" protId="A9WKE4" geneId="pgk"/>
        <gene id="158" protId="A9WI67" geneId="Caur_3163"/>
        <gene id="160" protId="A9WKM1" geneId="metG"/>
        <gene id="162" protId="A9WKK4" geneId="Caur_3447"/>
        <gene id="164" protId="A9WAX8" geneId="Caur_1540"/>
        <gene id="166" protId="A9WJH8" geneId="Caur_2677"/>
        <gene id="168" protId="A9WEU7" geneId="guaB"/>
        <gene id="171" protId="A9WDV3" geneId="Caur_1897"/>
        <gene id="175" protId="A9WAD0" geneId="Caur_1461"/>
        <gene id="177" protId="A9WE89" geneId="Caur_0501"/>
        <gene id="179" protId="A9WDY7" geneId="Caur_1931"/>
        <gene id="180" protId="A9WJ70" geneId="Caur_1116"/>
        <gene id="182" protId="A9WCD8" geneId="gatA"/>
        <gene id="184" protId="A9WJZ5" geneId="Caur_1217"/>
        <gene id="186" protId="A9WGQ4" geneId="ahcY"/>
        <gene id="190" protId="A9WHK0" geneId="Caur_3128"/>
        <gene id="193" protId="A9WEM4" geneId="Caur_2842"/>
        <gene id="196" protId="A9WEM2" geneId="Caur_2840"/>
        <gene id="198" protId="A9WAB8" geneId="Caur_1449"/>
        <gene id="200" protId="A9WFK3" geneId="Caur_0702"/>
        <gene id="202" protId="A9WGP6" geneId="infB"/>
        <gene id="204" protId="A9WE30" geneId="Caur_1974"/>
        <gene id="206" protId="A9WE29" geneId="Caur_1973"/>
        <gene id="209" protId="A9WG54" geneId="Caur_0737"/>
        <gene id="211" protId="A9WJR4" geneId="Caur_3344"/>
        <gene id="213" protId="A9WJ72" geneId="Caur_1119"/>
        <gene id="215" protId="A9WG15" geneId="gatB"/>
        <gene id="217" protId="A9WHV7" geneId="serC"/>
        <gene id="219" protId="A9WFZ9" geneId="mutS"/>
        <gene id="221" protId="A9WKK3" geneId="Caur_3446"/>
        <gene id="224" protId="A9WGC3" geneId="Caur_0806"/>
        <gene id="226" protId="A9WBV2" geneId="Caur_3726"/>
        <gene id="228" protId="A9WG09" geneId="Caur_2964"/>
        <gene id="230" protId="A9WCW3" geneId="Caur_0280"/>
        <gene id="232" protId="A9WH11" geneId="rpoC"/>
        <gene id="236" protId="A9WHU0" geneId="hutU"/>
        <gene id="238" protId="A9WI22" geneId="Caur_2507"/>
        <gene id="241" protId="A9WDV1" geneId="Caur_1895"/>
        <gene id="244" protId="A9WF01" geneId="Caur_2104"/>
        <gene id="246" protId="A9WA59" geneId="Caur_3557"/>
        <gene id="247" protId="A9WCR0" geneId="Caur_3845"/>
        <gene id="249" protId="A9WC90" geneId="Caur_0230"/>
        <gene id="257" protId="A9WII1" geneId="Caur_1049"/>
        <gene id="261" protId="A9WDZ7" geneId="purA"/>
        <gene id="264" protId="A9W9S9" geneId="Caur_1337"/>
        <gene id="266" protId="A9WHF7" geneId="Caur_3084"/>
        <gene id="269" protId="A9WIZ0" geneId="Caur_3261"/>
        <gene id="271" protId="A9WFC2" geneId="Caur_2907"/>
        <gene id="272" protId="A9WED2" geneId="Caur_1979"/>
        <gene id="275" protId="A9WBV5" geneId="Caur_3729"/>
        <gene id="276" protId="A9WAP0" geneId="Caur_0010"/>
        <gene id="281" protId="A9WEY1" geneId="Caur_2084"/>
        <gene id="283" protId="A9WH12" geneId="rpoB"/>
        <gene id="286" protId="A9WEM0" geneId="Caur_2070"/>
        <gene id="287" protId="A9WCC4" geneId="Caur_1698"/>
        <gene id="290" protId="A9WCB8" geneId="Caur_1692"/>
        <gene id="291" protId="A9WHJ5" geneId="Caur_3122"/>
        <gene id="292" protId="A9W9S6" geneId="Caur_1334"/>
        <gene id="294" protId="A9WFB7" geneId="Caur_2902"/>
        <gene id="296" protId="A9WB97" geneId="galK"/>
        <gene id="298" protId="A9WJ74" geneId="sucC"/>
        <gene id="300" protId="A9WIS8" geneId="Caur_2599"/>
        <gene id="302" protId="A9WEK8" geneId="purH"/>
        <gene id="304" protId="A9WF67" geneId="Caur_2850"/>
        <gene id="306" protId="A9WBE8" geneId="Caur_0101"/>
        <gene id="308" protId="A9WK62" geneId="obg"/>
        <gene id="310" protId="A9WEM1" geneId="lipA"/>
        <gene id="312" protId="A9WA78" geneId="trpS"/>
        <gene id="314" protId="A9WIR6" geneId="Caur_2587"/>
        <gene id="316" protId="A9WE79" geneId="prfA"/>
        <gene id="320" protId="A9WJ58" geneId="Caur_1104"/>
        <gene id="322" protId="A9WJZ9" geneId="Caur_1221"/>
        <gene id="325" protId="A9WJD1" geneId="Caur_1178"/>
        <gene id="327" protId="A9WJQ9" geneId="pepA"/>
        <gene id="329" protId="A9WFD8" geneId="smc"/>
        <gene id="331" protId="A9WFX1" geneId="Caur_2926"/>
        <gene id="333" protId="A9WAX3" geneId="gltX"/>
        <gene id="335" protId="A9WGW6" geneId="Caur_0825"/>
        <gene id="337" protId="A9WIL6" geneId="Caur_1085"/>
        <gene id="340" protId="A9WAC7" geneId="Caur_1458"/>
        <gene id="342" protId="A9WFQ6" geneId="prs"/>
        <gene id="344" protId="A9WHT7" geneId="guaA"/>
        <gene id="346" protId="A9WEH7" geneId="argS"/>
        <gene id="348" protId="A9WEV0" geneId="Caur_0619"/>
        <gene id="350" protId="A9WKC5" geneId="Caur_2802"/>
        <gene id="352" protId="A9WGQ8" geneId="mtnA"/>
        <gene id="354" protId="A9WGU9" geneId="Caur_3066"/>
        <gene id="358" protId="A9WIS6" geneId="hemE"/>
        <gene id="360" protId="A9WIK4" geneId="Caur_1072"/>
        <gene id="361" protId="A9WFH5" geneId="Caur_0673"/>
        <gene id="362" protId="A9WG07" geneId="Caur_2962"/>
        <gene id="364" protId="A9WA97" geneId="asnS"/>
        <gene id="366" protId="A9WGI9" geneId="Caur_2312"/>
        <gene id="368" protId="A9W9T3" geneId="Caur_1341"/>
        <gene id="370" protId="A9WEK2" geneId="ffh"/>
        <gene id="372" protId="A9WDI1" geneId="pyrD"/>
        <gene id="374" protId="A9WEX0" geneId="dnaJ"/>
        <gene id="377" protId="A9WHT9" geneId="hutI"/>
        <gene id="379" protId="A9WEY2" geneId="Caur_2085"/>
        <gene id="381" protId="A9WJ23" geneId="Caur_3294"/>
        <gene id="383" protId="A9WIS5" geneId="Caur_2596"/>
        <gene id="385" protId="A9WDL5" geneId="Caur_0371"/>
        <gene id="387" protId="A9WB17" geneId="arcB"/>
        <gene id="389" protId="A9WD90" geneId="cysS"/>
        <gene id="391" protId="A9WE28" geneId="Caur_1972"/>
        <gene id="392" protId="A9W9S7" geneId="Caur_1335"/>
        <gene id="393" protId="A9WB62" geneId="Caur_3672"/>
        <gene id="396" protId="A9WA07" geneId="Caur_3505"/>
        <gene id="399" protId="A9WBM7" geneId="proA"/>
        <gene id="401" protId="A9WIS3" geneId="hemC"/>
        <gene id="403" protId="O08307" geneId="polA"/>
        <gene id="405" protId="A9WBT6" geneId="ldh"/>
        <gene id="412" protId="A9WHG4" geneId="Caur_3091"/>
        <gene id="416" protId="A9WGN8" geneId="Caur_3005"/>
        <gene id="417" protId="A9WEY3" geneId="Caur_2086"/>
        <gene id="420" protId="A9WEV1" geneId="Caur_0620"/>
        <gene id="422" protId="A9WBA6" geneId="Caur_0059"/>
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        <gene id="427" protId="A9WAJ3" geneId="Caur_3599"/>
        <gene id="428" protId="A9WED1" geneId="Caur_1978"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="C.aurantiacus" link="http://www.uniprot.org/taxonomy/324602"/>
    </notes>
  </species>
  <species name="Oryctolagus cuniculus " NCBITaxId="9986">
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    <notes>
      <additionalInformation abbreviation="O.cuniculus" link="http://www.uniprot.org/taxonomy/9986"/>
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