<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="524" inparalogs="1429"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Chloroflexus aurantiacus " NCBITaxId="324602">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="3" protId="A9WHJ8" geneId="Caur_3126"/>
        <gene id="4" protId="A9WIG6" geneId="Caur_1034"/>
        <gene id="6" protId="A9WCJ8" geneId="carB"/>
        <gene id="8" protId="A9WFV9" geneId="dnaK"/>
        <gene id="10" protId="A9WJF0" geneId="valS"/>
        <gene id="12" protId="A9WH07" geneId="Caur_0869"/>
        <gene id="14" protId="A9WBV3" geneId="sucA"/>
        <gene id="16" protId="A9WEI4" geneId="Caur_2034"/>
        <gene id="18" protId="A9WF68" geneId="ilvD"/>
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        <gene id="23" protId="A9WD77" geneId="Caur_1827"/>
        <gene id="25" protId="A9WG14" geneId="Caur_2969"/>
        <gene id="27" protId="A9WIK5" geneId="Caur_1073"/>
        <gene id="29" protId="A9WGS4" geneId="atpD"/>
        <gene id="31" protId="A9WAN3" geneId="Caur_0003"/>
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        <gene id="35" protId="A9WJZ0" geneId="Caur_1212"/>
        <gene id="37" protId="A9WER4" geneId="Caur_0578"/>
        <gene id="39" protId="A9WC29" geneId="leuC"/>
        <gene id="41" protId="A9WJN7" geneId="groL1"/>
        <gene id="42" protId="A9WFA3" geneId="groL2"/>
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        <gene id="46" protId="A9WCR2" geneId="alaS"/>
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        <gene id="52" protId="A9WKM7" geneId="Caur_3471"/>
        <gene id="54" protId="A9W9W7" geneId="Caur_1375"/>
        <gene id="57" protId="A9WFP3" geneId="tuf1"/>
        <gene id="59" protId="A9WIR4" geneId="Caur_2585"/>
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        <gene id="65" protId="A9WEJ0" geneId="ftsH"/>
        <gene id="67" protId="A9WKF5" geneId="Caur_2832"/>
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        <gene id="73" protId="A9WKL7" geneId="mnmG"/>
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        <gene id="77" protId="A9WE57" geneId="glmS"/>
        <gene id="79" protId="A9W9X0" geneId="Caur_1378"/>
        <gene id="80" protId="A9WKH8" geneId="Caur_3421"/>
        <gene id="83" protId="A9WCM4" geneId="eno"/>
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        <gene id="93" protId="A9WFB4" geneId="nuoD2"/>
        <gene id="95" protId="A9WJ75" geneId="pyrG"/>
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        <gene id="99" protId="A9W9P7" geneId="Caur_1305"/>
        <gene id="100" protId="A9WD84" geneId="Caur_1834"/>
        <gene id="102" protId="A9WF95" geneId="Caur_2878"/>
        <gene id="103" protId="A9WCD5" geneId="Caur_1709"/>
        <gene id="106" protId="A9WGP6" geneId="infB"/>
        <gene id="108" protId="A9WJR8" geneId="argH"/>
        <gene id="111" protId="A9WA77" geneId="Caur_1408"/>
        <gene id="113" protId="A9WH11" geneId="rpoC"/>
        <gene id="117" protId="A9WJD3" geneId="htpG"/>
        <gene id="119" protId="A9WFB6" geneId="Caur_2901"/>
        <gene id="121" protId="A9WJQ6" geneId="Caur_3336"/>
        <gene id="125" protId="A9WDU4" geneId="Caur_1888"/>
        <gene id="127" protId="A9WEM2" geneId="Caur_2840"/>
        <gene id="129" protId="A9W9Q2" geneId="proS"/>
        <gene id="131" protId="A9WJX4" geneId="thrS"/>
        <gene id="133" protId="A9WCW3" geneId="Caur_0280"/>
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        <gene id="140" protId="A9WKE4" geneId="pgk"/>
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        <gene id="144" protId="A9WI27" geneId="Caur_2512"/>
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        <gene id="152" protId="A9WI58" geneId="glyA"/>
        <gene id="155" protId="A9WDY7" geneId="Caur_1931"/>
        <gene id="156" protId="A9WJ70" geneId="Caur_1116"/>
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        <gene id="160" protId="A9WKB9" geneId="Caur_2796"/>
        <gene id="162" protId="A9WJH8" geneId="Caur_2677"/>
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        <gene id="169" protId="A9WGQ4" geneId="ahcY"/>
        <gene id="171" protId="A9WEU7" geneId="guaB"/>
        <gene id="173" protId="A9WAB2" geneId="Caur_1443"/>
        <gene id="175" protId="A9WK04" geneId="lysS"/>
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        <gene id="185" protId="A9WDF2" geneId="Caur_3894"/>
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        <gene id="191" protId="A9WI67" geneId="Caur_3163"/>
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        <gene id="193" protId="A9WIG2" geneId="Caur_1030"/>
        <gene id="194" protId="A9WJG5" geneId="Caur_2663"/>
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        <gene id="199" protId="A9WII1" geneId="Caur_1049"/>
        <gene id="202" protId="A9WKM1" geneId="metG"/>
        <gene id="204" protId="A9WBM7" geneId="proA"/>
        <gene id="206" protId="A9WDV3" geneId="Caur_1897"/>
        <gene id="208" protId="A9WK21" geneId="Caur_1244"/>
        <gene id="210" protId="A9WDZ7" geneId="purA"/>
        <gene id="213" protId="A9WA07" geneId="Caur_3505"/>
        <gene id="215" protId="A9WE29" geneId="Caur_1973"/>
        <gene id="216" protId="A9WB61" geneId="Caur_3671"/>
        <gene id="217" protId="A9W9S6" geneId="Caur_1334"/>
        <gene id="219" protId="A9WBL1" geneId="Caur_1600"/>
        <gene id="222" protId="A9WHK0" geneId="Caur_3128"/>
        <gene id="224" protId="A9WJ74" geneId="sucC"/>
        <gene id="226" protId="A9WI34" geneId="aroC"/>
        <gene id="228" protId="A9WBV2" geneId="Caur_3726"/>
        <gene id="230" protId="A9WAR7" geneId="leuB"/>
        <gene id="232" protId="A9WIV3" geneId="Caur_2624"/>
        <gene id="234" protId="A9WEK8" geneId="purH"/>
        <gene id="236" protId="A9WC77" geneId="Caur_0217"/>
        <gene id="238" protId="A9WH12" geneId="rpoB"/>
        <gene id="241" protId="A9WCD8" geneId="gatA"/>
        <gene id="243" protId="A9WKM8" geneId="metX"/>
        <gene id="245" protId="A9WFD8" geneId="smc"/>
        <gene id="247" protId="A9WIZ0" geneId="Caur_3261"/>
        <gene id="249" protId="A9WF01" geneId="Caur_2104"/>
        <gene id="251" protId="A9WIS8" geneId="Caur_2599"/>
        <gene id="253" protId="A9WEL6" geneId="Caur_2066"/>
        <gene id="255" protId="A9WFK3" geneId="Caur_0702"/>
        <gene id="257" protId="A9WDV1" geneId="Caur_1895"/>
        <gene id="259" protId="A9WIB9" geneId="Caur_3220"/>
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        <gene id="262" protId="A9WD13" geneId="Caur_0331"/>
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        <gene id="266" protId="A9WFQ6" geneId="prs"/>
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        <gene id="272" protId="A9WAX6" geneId="Caur_1538"/>
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        <gene id="280" protId="A9WFR7" geneId="panB"/>
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        <gene id="284" protId="A9WA59" geneId="Caur_3557"/>
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        <gene id="297" protId="A9WGE1" geneId="Caur_2264"/>
        <gene id="300" protId="A9WEM1" geneId="lipA"/>
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        <gene id="308" protId="A9WF67" geneId="Caur_2850"/>
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        <gene id="326" protId="A9WBE8" geneId="Caur_0101"/>
        <gene id="328" protId="A9WH03" geneId="carA"/>
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        <gene id="332" protId="A9WBV8" geneId="tgt"/>
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    <notes>
      <additionalInformation abbreviation="C.aurantiacus" link="http://www.uniprot.org/taxonomy/324602"/>
    </notes>
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    <notes>
      <additionalInformation abbreviation="C.militaris" link="http://www.uniprot.org/taxonomy/983644"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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