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    <notes>
      <additionalInformation abbreviation="B.hominis" link="http://www.uniprot.org/taxonomy/12968"/>
    </notes>
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        <gene id="78" protId="Q8F5H8" geneId="pgk"/>
        <gene id="81" protId="Q8F7Q4" geneId="nuoF"/>
        <gene id="83" protId="Q8F738" geneId="purA"/>
        <gene id="87" protId="Q8F9L0" geneId="fumC"/>
        <gene id="89" protId="Q8F4N1" geneId="acoB"/>
        <gene id="93" protId="Q8F747" geneId="sucD"/>
        <gene id="98" protId="Q8F6A0" geneId="glyA"/>
        <gene id="100" protId="Q8F496" geneId="mutS"/>
        <gene id="102" protId="Q8F4F4" geneId="guaA"/>
        <gene id="104" protId="Q8F746" geneId="sucC"/>
        <gene id="106" protId="Q8F3S1" geneId="LA_2329"/>
        <gene id="108" protId="Q8F290" geneId="lpd"/>
        <gene id="110" protId="Q8F3W6" geneId="purH"/>
        <gene id="112" protId="Q8F261" geneId="LA_2916"/>
        <gene id="114" protId="Q8F7S5" geneId="putA"/>
        <gene id="116" protId="Q8F743" geneId="miaB"/>
        <gene id="118" protId="Q8F5K1" geneId="aspS"/>
        <gene id="120" protId="Q8EXU6" geneId="pfkA"/>
        <gene id="122" protId="Q8F7Q2" geneId="nuoD"/>
        <gene id="125" protId="Q8EZN0" geneId="prs"/>
        <gene id="127" protId="Q8F4B2" geneId="ssl2"/>
        <gene id="132" protId="Q8F3H0" geneId="LA_2433"/>
        <gene id="136" protId="Q8F0S3" geneId="rpoC"/>
        <gene id="138" protId="Q8F7Q5" geneId="nuoH"/>
        <gene id="141" protId="Q8F601" geneId="nadB"/>
        <gene id="144" protId="Q8F522" geneId="asnS"/>
        <gene id="146" protId="Q8EX62" geneId="pykF"/>
        <gene id="148" protId="Q8EXA3" geneId="speE2"/>
        <gene id="150" protId="P61441" geneId="dnaJ"/>
        <gene id="152" protId="Q8F652" geneId="ugd"/>
        <gene id="155" protId="Q8F4N2" geneId="aceF"/>
        <gene id="157" protId="Q8EYX2" geneId="purF"/>
        <gene id="159" protId="Q8F0Q7" geneId="srmB"/>
        <gene id="161" protId="Q8F7Q9" geneId="nuoM"/>
        <gene id="163" protId="Q8F2Y6" geneId="dcp"/>
        <gene id="165" protId="Q8F4A2" geneId="mdh"/>
        <gene id="167" protId="Q8F0D1" geneId="glpK"/>
        <gene id="171" protId="Q8F8V2" geneId="uup"/>
        <gene id="173" protId="Q8CXS3" geneId="tgt"/>
        <gene id="175" protId="Q8F5L7" geneId="rfbB"/>
        <gene id="179" protId="Q8F0S2" geneId="rpoB"/>
        <gene id="181" protId="Q8F523" geneId="folD"/>
        <gene id="183" protId="Q8F9S6" geneId="prfA"/>
        <gene id="185" protId="Q8F8D2" geneId="recQ"/>
        <gene id="193" protId="Q8EXZ9" geneId="htpG"/>
        <gene id="195" protId="Q8F491" geneId="manB"/>
        <gene id="197" protId="Q8F148" geneId="proS"/>
        <gene id="199" protId="Q8F384" geneId="gckA"/>
        <gene id="201" protId="Q8F4H4" geneId="spoVK"/>
        <gene id="203" protId="Q8F2G2" geneId="ahpC"/>
        <gene id="205" protId="Q8EXD8" geneId="argK"/>
        <gene id="207" protId="Q8F0Q1" geneId="pepA"/>
        <gene id="209" protId="P97043" geneId="mnmE"/>
        <gene id="212" protId="Q8F525" geneId="cysS"/>
        <gene id="215" protId="Q8EZD6" geneId="metG"/>
        <gene id="217" protId="Q8EYM3" geneId="gltX"/>
        <gene id="219" protId="Q8F3E9" geneId="map"/>
        <gene id="223" protId="Q8EZA7" geneId="galE"/>
        <gene id="230" protId="Q8F5R7" geneId="sunT"/>
        <gene id="233" protId="Q8CXU0" geneId="LA_1179"/>
        <gene id="236" protId="Q8EY78" geneId="serS"/>
        <gene id="238" protId="Q8F692" geneId="LA_1417"/>
        <gene id="240" protId="Q8F2A8" geneId="mtnA"/>
        <gene id="242" protId="Q8F7K1" geneId="infB"/>
        <gene id="244" protId="Q8EZ98" geneId="panB"/>
        <gene id="246" protId="Q8F0X6" geneId="thiM"/>
        <gene id="254" protId="Q8F9T4" geneId="faa1"/>
        <gene id="259" protId="Q8F1G4" geneId="ara1"/>
        <gene id="261" protId="Q8EZT4" geneId="prfB"/>
        <gene id="264" protId="Q8F935" geneId="gcvT"/>
        <gene id="270" protId="Q8F426" geneId="mgtA"/>
        <gene id="272" protId="Q8F812" geneId="pyrB"/>
        <gene id="276" protId="Q8F8G3" geneId="zntA"/>
        <gene id="279" protId="Q8F0E1" geneId="LA_3553"/>
        <gene id="281" protId="Q8F3Y8" geneId="glpA"/>
        <gene id="283" protId="Q8F3R3" geneId="mrp"/>
        <gene id="285" protId="Q8F4N0" geneId="acoA"/>
        <gene id="288" protId="Q8EYL9" geneId="LA_4194"/>
        <gene id="290" protId="Q8F5I5" geneId="tpiA"/>
        <gene id="292" protId="Q8F7R0" geneId="nuoN"/>
        <gene id="294" protId="Q8F625" geneId="mnmA"/>
        <gene id="296" protId="Q8F3S2" geneId="mutY"/>
        <gene id="299" protId="Q8F4E3" geneId="LA_2098"/>
        <gene id="301" protId="Q8EZY8" geneId="salX"/>
        <gene id="303" protId="Q8F1P9" geneId="purB"/>
        <gene id="308" protId="Q8EYJ5" geneId="cysN"/>
        <gene id="310" protId="Q8F0I0" geneId="purC"/>
        <gene id="312" protId="Q8F7U0" geneId="obg"/>
        <gene id="314" protId="Q8F394" geneId="panC"/>
        <gene id="317" protId="Q8F5L4" geneId="citT"/>
        <gene id="319" protId="Q8F2T1" geneId="pepP"/>
        <gene id="322" protId="Q8F4A1" geneId="bioF"/>
        <gene id="324" protId="Q8F4G9" geneId="hflC"/>
        <gene id="327" protId="Q8F6C0" geneId="glyQS"/>
        <gene id="329" protId="Q8F0R9" geneId="rplA"/>
        <gene id="331" protId="Q8EYG1" geneId="folE"/>
        <gene id="333" protId="Q8F3H1" geneId="LA_2432"/>
        <gene id="336" protId="Q8F7Q0" geneId="nuoB"/>
        <gene id="338" protId="Q8F1Y4" geneId="rsmI"/>
        <gene id="352" protId="Q8EXI5" geneId="LB_225"/>
        <gene id="354" protId="Q8F6K1" geneId="der"/>
        <gene id="356" protId="Q8F115" geneId="LA_3324"/>
        <gene id="357" protId="Q8F119" geneId="LA_3320"/>
        <gene id="358" protId="Q8F3F9" geneId="LA_2447"/>
        <gene id="359" protId="Q8F116" geneId="LA_3323"/>
        <gene id="360" protId="Q8F3F8" geneId="LA_2448"/>
        <gene id="361" protId="Q8F118" geneId="LA_3321"/>
        <gene id="362" protId="Q8F3F6" geneId="LA_2450"/>
        <gene id="363" protId="Q8F213" geneId="LA_2964"/>
        <gene id="364" protId="Q8F117" geneId="LA_3322"/>
        <gene id="365" protId="Q8F212" geneId="LA_2966"/>
        <gene id="366" protId="Q8F7S1" geneId="LA_0873"/>
        <gene id="367" protId="Q8F3F4" geneId="LA_2452"/>
        <gene id="368" protId="Q8F2B3" geneId="LA_2862"/>
        <gene id="369" protId="Q8F3G3" geneId="LA_2443"/>
        <gene id="371" protId="Q8F3K8" geneId="rpe"/>
        <gene id="373" protId="Q8EXA4" geneId="pyrF"/>
        <gene id="375" protId="Q9XD15" geneId="adk"/>
        <gene id="377" protId="Q8F0D3" geneId="sufC"/>
        <gene id="386" protId="Q8F4G4" geneId="LA_2077"/>
        <gene id="388" protId="Q8F4X7" geneId="serA"/>
        <gene id="390" protId="Q8F319" geneId="fliI"/>
        <gene id="392" protId="Q8F3A9" geneId="ats1"/>
        <gene id="394" protId="Q8F672" geneId="nagC"/>
        <gene id="397" protId="Q8F710" geneId="rimO"/>
        <gene id="399" protId="Q8EZB6" geneId="gpsA"/>
        <gene id="401" protId="Q8F7Q3" geneId="nuoE"/>
        <gene id="403" protId="P59164" geneId="rpsL"/>
        <gene id="405" protId="Q9XD36" geneId="rplC"/>
        <gene id="407" protId="Q8FA04" geneId="suhB"/>
        <gene id="409" protId="Q8F631" geneId="proC"/>
        <gene id="411" protId="Q8F3Z7" geneId="thiJ"/>
        <gene id="413" protId="Q8F411" geneId="tyrS"/>
        <gene id="415" protId="Q8F622" geneId="rluA"/>
        <gene id="418" protId="Q8FA29" geneId="LA_0007"/>
        <gene id="420" protId="Q8F7D9" geneId="btuE"/>
        <gene id="422" protId="Q8EZG9" geneId="galK"/>
        <gene id="424" protId="Q8F433" geneId="czcD"/>
        <gene id="426" protId="Q8F3Y0" geneId="nifS"/>
        <gene id="428" protId="Q8EYP5" geneId="ndk"/>
        <gene id="430" protId="Q8F438" geneId="sua5"/>
        <gene id="440" protId="Q8EZ25" geneId="LA_4036"/>
        <gene id="442" protId="Q8EYC6" geneId="pyrD"/>
        <gene id="445" protId="Q8F4D2" geneId="LA_2109"/>
        <gene id="447" protId="Q8F839" geneId="LA_0720"/>
        <gene id="449" protId="Q8EZ83" geneId="tas"/>
        <gene id="451" protId="Q8F661" geneId="gcp"/>
        <gene id="453" protId="Q9XD33" geneId="rplB"/>
        <gene id="455" protId="Q8F768" geneId="LA_1080"/>
        <gene id="457" protId="Q8F4J6" geneId="rsmH"/>
        <gene id="459" protId="Q7ZAM9" geneId="smc"/>
        <gene id="462" protId="Q8F3I8" geneId="LA_2415"/>
        <gene id="464" protId="Q8F8Q2" geneId="dinB"/>
        <gene id="466" protId="Q8EYR3" geneId="pheS"/>
        <gene id="468" protId="Q8F482" geneId="nth"/>
        <gene id="470" protId="Q8F936" geneId="gcvH"/>
        <gene id="472" protId="Q8F7M9" geneId="acuC"/>
        <gene id="474" protId="Q8F9N0" geneId="nuoI"/>
        <gene id="476" protId="Q8F679" geneId="fabB"/>
        <gene id="479" protId="Q8F6D6" geneId="LA_1372"/>
        <gene id="480" protId="Q8F4V6" geneId="LA_1933"/>
        <gene id="483" protId="Q8F7L4" geneId="LA_0930"/>
        <gene id="485" protId="Q8F361" geneId="fkpA"/>
        <gene id="487" protId="Q8F7H4" geneId="fabG"/>
        <gene id="488" protId="Q8EY23" geneId="LB_034"/>
        <gene id="490" protId="Q8F7U1" geneId="rpmA"/>
        <gene id="492" protId="Q8F7Q1" geneId="nuoC"/>
        <gene id="494" protId="Q8F8Z0" geneId="trpS"/>
        <gene id="497" protId="Q8F7H6" geneId="ccmA"/>
        <gene id="498" protId="Q8F6Z1" geneId="cysA"/>
        <gene id="500" protId="Q8F9A3" geneId="LA_0292"/>
        <gene id="502" protId="Q8F8Y6" geneId="etfB"/>
        <gene id="504" protId="Q8EYC1" geneId="hpt"/>
        <gene id="507" protId="Q8F729" geneId="dut"/>
        <gene id="512" protId="Q8F356" geneId="LA_2554"/>
        <gene id="514" protId="Q8F7P9" geneId="nuoA"/>
        <gene id="525" protId="Q8EZX5" geneId="LA_3726"/>
        <gene id="528" protId="Q8EXV5" geneId="nagD"/>
        <gene id="530" protId="Q8EXT7" geneId="LB_121"/>
        <gene id="532" protId="Q8F0R8" geneId="rplK"/>
        <gene id="534" protId="Q8F0U0" geneId="pqqL"/>
        <gene id="536" protId="Q8EZW0" geneId="LA_3741"/>
        <gene id="539" protId="Q8F4I7" geneId="mmsB"/>
        <gene id="541" protId="Q8F473" geneId="LA_2172"/>
        <gene id="543" protId="Q8CXT5" geneId="miaA"/>
        <gene id="545" protId="Q8F3V8" geneId="rsuA"/>
        <gene id="547" protId="Q8F5Q6" geneId="gcd1"/>
        <gene id="549" protId="Q8F5F1" geneId="lipB"/>
        <gene id="551" protId="Q8F6Q7" geneId="rplT"/>
        <gene id="555" protId="Q8EZ27" geneId="paaY"/>
        <gene id="558" protId="Q9XD19" geneId="rpsE"/>
        <gene id="560" protId="Q8F7J9" geneId="rpsO"/>
        <gene id="563" protId="Q8F5J3" geneId="argS"/>
        <gene id="566" protId="Q8F985" geneId="LA_0311"/>
        <gene id="568" protId="Q8EZ21" geneId="ppa"/>
        <gene id="570" protId="Q9XD25" geneId="rplX"/>
        <gene id="572" protId="Q8EY77" geneId="tatD"/>
        <gene id="574" protId="Q8F4R1" geneId="LA_1979"/>
        <gene id="576" protId="Q8F7A1" geneId="lysA"/>
        <gene id="578" protId="Q8F4B1" geneId="LA_2130"/>
        <gene id="580" protId="Q8EZG6" geneId="pgi"/>
        <gene id="582" protId="Q8F1S6" geneId="LA_3052"/>
        <gene id="585" protId="Q8EY86" geneId="dnaX"/>
        <gene id="588" protId="Q8EXX4" geneId="acpP"/>
        <gene id="590" protId="Q8F9Y3" geneId="hisS"/>
        <gene id="592" protId="Q8EZQ7" geneId="LA_3795"/>
        <gene id="594" protId="Q8F2G3" geneId="sufB"/>
        <gene id="597" protId="Q8F7W0" geneId="birA"/>
        <gene id="599" protId="Q8F3Q2" geneId="pth"/>
        <gene id="601" protId="Q8F1C0" geneId="ispA"/>
        <gene id="603" protId="Q8F497" geneId="serB"/>
        <gene id="605" protId="Q8F392" geneId="xthA"/>
        <gene id="607" protId="Q8F8H7" geneId="sul1"/>
        <gene id="610" protId="Q8F305" geneId="LA_2606"/>
        <gene id="613" protId="Q9XD26" geneId="rplN"/>
        <gene id="615" protId="Q8F6V2" geneId="LA_1198"/>
        <gene id="616" protId="Q8F7B6" geneId="caiD"/>
        <gene id="618" protId="Q8F0S5" geneId="rpsG"/>
        <gene id="620" protId="Q8F7Y6" geneId="tmk"/>
        <gene id="623" protId="Q9XD11" geneId="rpsK"/>
        <gene id="625" protId="Q8F132" geneId="dapA"/>
        <gene id="632" protId="Q93TV7" geneId="hsp15"/>
        <gene id="635" protId="P61437" geneId="groS"/>
        <gene id="638" protId="Q8F999" geneId="adhP"/>
        <gene id="640" protId="Q8CXR2" geneId="mtnP"/>
        <gene id="642" protId="Q8F5N2" geneId="LA_1635"/>
        <gene id="643" protId="Q8F209" geneId="LA_2969"/>
        <gene id="646" protId="Q8F6L0" geneId="LA_1293"/>
        <gene id="648" protId="Q8F153" geneId="dxs"/>
        <gene id="650" protId="Q8F145" geneId="cdsA"/>
        <gene id="652" protId="Q93LE9" geneId="def"/>
        <gene id="656" protId="Q8EXX9" geneId="LB_078"/>
        <gene id="659" protId="Q8F5G0" geneId="topA"/>
        <gene id="662" protId="Q8F6I3" geneId="purL"/>
        <gene id="665" protId="Q8F805" geneId="LA_0785"/>
        <gene id="667" protId="Q8F143" geneId="frr"/>
        <gene id="669" protId="Q8F5J7" geneId="ybeY"/>
        <gene id="672" protId="Q8F0K1" geneId="LA_3492"/>
        <gene id="675" protId="Q8F0T3" geneId="rpsI"/>
        <gene id="679" protId="Q9XD24" geneId="rplE"/>
        <gene id="681" protId="Q8F8Z3" geneId="ksgA"/>
        <gene id="683" protId="Q8EY58" geneId="ilvE"/>
        <gene id="688" protId="Q8F4W8" geneId="LA_1920"/>
        <gene id="691" protId="Q8F3L1" geneId="rpsP"/>
        <gene id="694" protId="Q9XD32" geneId="rpsS"/>
        <gene id="696" protId="Q8F3K6" geneId="fmt"/>
        <gene id="698" protId="Q8F0N0" geneId="LA_3462"/>
        <gene id="702" protId="Q8F814" geneId="dapL"/>
        <gene id="705" protId="Q8F5P1" geneId="LA_1626"/>
        <gene id="707" protId="Q8F0D6" geneId="iscU"/>
        <gene id="709" protId="Q9XD08" geneId="rplQ"/>
        <gene id="711" protId="Q8F816" geneId="LA_0773"/>
        <gene id="713" protId="Q8CXR3" geneId="LA_4247"/>
        <gene id="714" protId="Q8EZT1" geneId="LA_3770"/>
        <gene id="716" protId="Q8F8W6" geneId="LA_0433"/>
        <gene id="718" protId="Q8F7U3" geneId="rplU"/>
        <gene id="721" protId="Q9XD12" geneId="rpsM"/>
        <gene id="723" protId="Q9XD27" geneId="rpsQ"/>
        <gene id="725" protId="P61445" geneId="grpE"/>
        <gene id="728" protId="Q8F140" geneId="rpsB"/>
        <gene id="730" protId="Q8F3E0" geneId="ste14"/>
        <gene id="732" protId="Q8F8J6" geneId="LA_0559"/>
        <gene id="734" protId="Q8F8N2" geneId="truD"/>
        <gene id="736" protId="Q8F136" geneId="acpS"/>
        <gene id="738" protId="Q9XD37" geneId="rpsJ"/>
        <gene id="745" protId="Q8F1Y2" geneId="eutG"/>
        <gene id="752" protId="Q8F4Z2" geneId="LA_1896"/>
        <gene id="754" protId="Q8EZU3" geneId="LA_3758"/>
        <gene id="757" protId="Q8EY57" geneId="LA_4361"/>
        <gene id="759" protId="Q8F3L4" geneId="rplS"/>
        <gene id="774" protId="Q8F459" geneId="LA_2188"/>
        <gene id="779" protId="Q8F681" geneId="ptc1"/>
        <gene id="782" protId="Q8F353" geneId="clpX"/>
        <gene id="783" protId="Q8F3Q5" geneId="hslU"/>
        <gene id="792" protId="Q8EY06" geneId="LB_051"/>
        <gene id="794" protId="Q8F4W0" geneId="LA_1928"/>
        <gene id="796" protId="Q8CXU2" geneId="spoU"/>
        <gene id="798" protId="Q8F958" geneId="glpQ"/>
        <gene id="800" protId="Q8F6T8" geneId="uspA"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="L.interrogans" link="http://www.uniprot.org/taxonomy/189518"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="1009"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="878"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="808"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="798"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="0.789"/>
      </geneRef>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="742"/>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="711"/>
      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="701"/>
      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="15">
        <score id="inparalog" value="0.984"/>
      </geneRef>
      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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