<?xml version="1.0" encoding="utf-8"?>
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    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="B.hominis" link="http://www.uniprot.org/taxonomy/12968"/>
    </notes>
  </species>
  <species name="Hyaloperonospora arabidopsidis PE=3 SV=1" NCBITaxId="559515">
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        <gene id="3236" protId="M4B6I4" geneId="uncharacterized_M4B6I4"/>
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        <gene id="3251" protId="M4C290" geneId="uncharacterized_M4C290"/>
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        <gene id="3283" protId="M4BYF1" geneId="uncharacterized_M4BYF1"/>
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        <gene id="3297" protId="M4BPV1" geneId="uncharacterized_M4BPV1"/>
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        <gene id="3303" protId="M4C1L1" geneId="uncharacterized_M4C1L1"/>
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        <gene id="3310" protId="M4C363" geneId="uncharacterized_M4C363"/>
        <gene id="3311" protId="M4C364" geneId="uncharacterized_M4C364"/>
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        <gene id="3316" protId="M4BJV0" geneId="uncharacterized_M4BJV0"/>
        <gene id="3317" protId="M4C5Z6" geneId="uncharacterized_M4C5Z6"/>
        <gene id="3319" protId="M4B414" geneId="uncharacterized_M4B414"/>
        <gene id="3320" protId="M4BZ51" geneId="uncharacterized_M4BZ51"/>
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        <gene id="3328" protId="M4BSD0" geneId="uncharacterized_M4BSD0"/>
        <gene id="3330" protId="M4BX43" geneId="uncharacterized_M4BX43"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="H.arabidopsidis" link="http://www.uniprot.org/taxonomy/559515"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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