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        <gene id="412" protId="G2XNQ4" geneId="BofuT4_P075930.1"/>
        <gene id="414" protId="G2YI83" geneId="BofuT4_P017260.1"/>
        <gene id="415" protId="G2XTQ4" geneId="BofuT4_P063200.1"/>
        <gene id="417" protId="G2XUT9" geneId="BofuT4_P058390.1"/>
        <gene id="418" protId="G2Y4Q4" geneId="BofuT4_P036240.1"/>
        <gene id="420" protId="G2YNH2" geneId="BofuT4_P121890.1"/>
        <gene id="422" protId="G2Y528" geneId="BofuT4_P037480.1"/>
        <gene id="424" protId="G2YBG2" geneId="BofuT4_P102540.1"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="B.fuckeliana" link="http://www.uniprot.org/taxonomy/999810"/>
    </notes>
  </species>
  <species name="Chlamydia trachomatis " NCBITaxId="272561">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
        <gene id="2" protId="O84022" geneId="ileS"/>
        <gene id="4" protId="O84250" geneId="glgP"/>
        <gene id="6" protId="O84348" geneId="lon"/>
        <gene id="8" protId="O84115" geneId="clpB"/>
        <gene id="10" protId="P17821" geneId="dnaK"/>
        <gene id="12" protId="P0C0Z7" geneId="groL"/>
        <gene id="14" protId="O84444" geneId="fusA"/>
        <gene id="17" protId="O84304" geneId="valS"/>
        <gene id="19" protId="O84067" geneId="lepA"/>
        <gene id="21" protId="O84754" geneId="alaS"/>
        <gene id="23" protId="O84834" geneId="nrdA"/>
        <gene id="26" protId="O84755" geneId="tktB"/>
        <gene id="28" protId="O84066" geneId="gnd"/>
        <gene id="30" protId="P0CD73" geneId="mnmG"/>
        <gene id="32" protId="P0CD71" geneId="tuf"/>
        <gene id="34" protId="O84863" geneId="fumC"/>
        <gene id="36" protId="O84211" geneId="leuS"/>
        <gene id="38" protId="O84585" geneId="thrS"/>
        <gene id="40" protId="O84848" geneId="ftsH"/>
        <gene id="42" protId="O84098" geneId="infB"/>
        <gene id="44" protId="Q59321" geneId="pyrG"/>
        <gene id="46" protId="O84172" geneId="trpB"/>
        <gene id="48" protId="O84591" geneId="eno"/>
        <gene id="50" protId="O84126" geneId="accC"/>
        <gene id="52" protId="P0CE13" geneId="gap"/>
        <gene id="54" protId="O84101" geneId="trxB"/>
        <gene id="56" protId="O84823" geneId="glmS"/>
        <gene id="58" protId="O84831" geneId="CT_824"/>
        <gene id="60" protId="P0CD78" geneId="pgk"/>
        <gene id="62" protId="O84546" geneId="aspS"/>
        <gene id="64" protId="O84829" geneId="sucD"/>
        <gene id="66" protId="O84035" geneId="metG"/>
        <gene id="68" protId="O84248" geneId="pdhB"/>
        <gene id="70" protId="O84786" geneId="lysS"/>
        <gene id="72" protId="P0CE21" geneId="pyk"/>
        <gene id="74" protId="O84797" geneId="mutS"/>
        <gene id="76" protId="O84561" geneId="lpdA"/>
        <gene id="78" protId="O84315" geneId="tal"/>
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        <gene id="82" protId="O84828" geneId="sucC"/>
        <gene id="85" protId="P0CE09" geneId="rpoB"/>
        <gene id="89" protId="O84316" geneId="rpoC"/>
        <gene id="91" protId="P36431" geneId="proS"/>
        <gene id="94" protId="O84439" geneId="glyA"/>
        <gene id="96" protId="O84614" geneId="uvrD"/>
        <gene id="98" protId="O84698" geneId="CT_692"/>
        <gene id="100" protId="O84058" geneId="sucB_1"/>
        <gene id="102" protId="O84352" geneId="yjjK"/>
        <gene id="104" protId="O84775" geneId="fabF"/>
        <gene id="106" protId="O84309" geneId="atpB"/>
        <gene id="108" protId="O84006" geneId="gatA"/>
        <gene id="110" protId="O84373" geneId="aroC"/>
        <gene id="112" protId="O84360" geneId="yyaL"/>
        <gene id="114" protId="O84562" geneId="lipA"/>
        <gene id="116" protId="O84451" geneId="gltX"/>
        <gene id="118" protId="O84094" geneId="ychF"/>
        <gene id="121" protId="O84642" geneId="tyrB"/>
        <gene id="123" protId="O84345" geneId="dnaJ"/>
        <gene id="125" protId="O84812" geneId="ptr"/>
        <gene id="127" protId="O84026" geneId="prfA"/>
        <gene id="129" protId="O84196" geneId="tgt"/>
        <gene id="131" protId="O84638" geneId="hemB"/>
        <gene id="133" protId="P0CD72" geneId="pgi"/>
        <gene id="135" protId="O84065" geneId="tyrS"/>
        <gene id="137" protId="O84530" geneId="rplB"/>
        <gene id="139" protId="O84596" geneId="sdhA"/>
        <gene id="141" protId="O84296" geneId="sodA"/>
        <gene id="143" protId="O84007" geneId="gatB"/>
        <gene id="145" protId="O84266" geneId="msbA"/>
        <gene id="147" protId="O84859" geneId="map"/>
        <gene id="149" protId="O84712" geneId="clpP2"/>
        <gene id="151" protId="O84630" geneId="nfo"/>
        <gene id="153" protId="O84460" geneId="argS"/>
        <gene id="155" protId="O84734" geneId="serS"/>
        <gene id="157" protId="O84247" geneId="pdhA"/>
        <gene id="159" protId="O84613" geneId="ung"/>
        <gene id="163" protId="O84732" geneId="zntA"/>
        <gene id="165" protId="O84676" geneId="yscN"/>
        <gene id="166" protId="O84722" geneId="fliI"/>
        <gene id="168" protId="O84332" geneId="tpiA"/>
        <gene id="170" protId="O84368" geneId="asd"/>
        <gene id="172" protId="O84619" geneId="folKP"/>
        <gene id="174" protId="O84028" geneId="ffh"/>
        <gene id="176" protId="P38004" geneId="fabG"/>
        <gene id="178" protId="O84835" geneId="nrdB"/>
        <gene id="180" protId="O84704" geneId="mnmE"/>
        <gene id="182" protId="O84720" geneId="CT_715"/>
        <gene id="184" protId="O84123" geneId="rpe"/>
        <gene id="186" protId="O84260" geneId="yhfO"/>
        <gene id="188" protId="O84222" geneId="CT_220"/>
        <gene id="190" protId="P66370" geneId="rpsL"/>
        <gene id="193" protId="O84782" geneId="bioF"/>
        <gene id="196" protId="O84578" geneId="pepP"/>
        <gene id="198" protId="O84096" geneId="truB"/>
        <gene id="200" protId="O84130" geneId="adk"/>
        <gene id="202" protId="O84649" geneId="topA"/>
        <gene id="204" protId="O84492" geneId="hemH"/>
        <gene id="206" protId="O84771" geneId="miaA"/>
        <gene id="208" protId="O84391" geneId="CT_386"/>
        <gene id="210" protId="O84508" geneId="ndk"/>
        <gene id="212" protId="O84241" geneId="fabD"/>
        <gene id="214" protId="P0CD79" geneId="psd"/>
        <gene id="216" protId="O84200" geneId="gcp"/>
        <gene id="218" protId="O84533" geneId="rplC"/>
        <gene id="220" protId="O84033" geneId="gmk"/>
        <gene id="223" protId="O84864" geneId="ychM"/>
        <gene id="225" protId="P55137" geneId="CT_742"/>
        <gene id="227" protId="O84320" geneId="rplA"/>
        <gene id="229" protId="O84665" geneId="sfhB"/>
        <gene id="231" protId="O84595" geneId="sdhB"/>
        <gene id="233" protId="O84779" geneId="cysQ"/>
        <gene id="235" protId="O84463" geneId="CT_457"/>
        <gene id="237" protId="O84687" geneId="rpsB"/>
        <gene id="239" protId="O84752" geneId="hemE"/>
        <gene id="241" protId="O84358" geneId="rsmA"/>
        <gene id="243" protId="O84456" geneId="uppS"/>
        <gene id="246" protId="O84608" geneId="ahpC"/>
        <gene id="248" protId="O84410" geneId="ribE"/>
        <gene id="250" protId="O84843" geneId="pheS"/>
        <gene id="252" protId="O84435" geneId="ubiE"/>
        <gene id="258" protId="O84781" geneId="aas"/>
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        <gene id="262" protId="O84750" geneId="hemG"/>
        <gene id="264" protId="O84469" geneId="truA"/>
        <gene id="266" protId="P0CD84" geneId="rplQ"/>
        <gene id="268" protId="O84589" geneId="trpS"/>
        <gene id="272" protId="O84212" geneId="hemL"/>
        <gene id="274" protId="O84294" geneId="dut"/>
        <gene id="276" protId="O84599" geneId="ycfH"/>
        <gene id="278" protId="P0CE01" geneId="rplF"/>
        <gene id="280" protId="O84737" geneId="ribH"/>
        <gene id="282" protId="P0CE04" geneId="rpsM"/>
        <gene id="284" protId="O84353" geneId="CT_349"/>
        <gene id="286" protId="O84087" geneId="CT_085"/>
        <gene id="288" protId="O84660" geneId="yhbG"/>
        <gene id="290" protId="O84321" geneId="rplK"/>
        <gene id="292" protId="O84215" geneId="rpiA"/>
        <gene id="294" protId="O84719" geneId="gpsA"/>
        <gene id="296" protId="O84792" geneId="rpsN"/>
        <gene id="298" protId="O84027" geneId="prmC"/>
        <gene id="302" protId="O84338" geneId="dnaX_2"/>
        <gene id="304" protId="O84395" geneId="dapL"/>
        <gene id="310" protId="O84366" geneId="dapA"/>
        <gene id="312" protId="O84127" geneId="rplM"/>
        <gene id="314" protId="O84851" geneId="yfhC"/>
        <gene id="316" protId="O84081" geneId="folD"/>
        <gene id="318" protId="P66480" geneId="rpsS"/>
        <gene id="320" protId="O84132" geneId="glnQ"/>
        <gene id="321" protId="O84695" geneId="dppF"/>
        <gene id="322" protId="O84205" geneId="oppF"/>
        <gene id="323" protId="O84154" geneId="ycfV"/>
        <gene id="324" protId="O84071" geneId="CT_068"/>
        <gene id="326" protId="O84189" geneId="pgl"/>
        <gene id="328" protId="O84367" geneId="lysC"/>
        <gene id="330" protId="O84822" geneId="glmM"/>
        <gene id="348" protId="O84218" geneId="xasA"/>
        <gene id="350" protId="O84544" geneId="trxA"/>
        <gene id="352" protId="P0C0Z8" geneId="groS"/>
        <gene id="354" protId="O84806" geneId="pth"/>
        <gene id="356" protId="P0CE03" geneId="rpsK"/>
        <gene id="359" protId="O84221" geneId="ubiA"/>
        <gene id="361" protId="O84128" geneId="rpsI"/>
        <gene id="363" protId="O84547" geneId="hisS"/>
        <gene id="365" protId="P0CD83" geneId="rplP"/>
        <gene id="367" protId="O84527" geneId="rpsC"/>
        <gene id="369" protId="O84650" geneId="yohI"/>
        <gene id="371" protId="O84220" geneId="surE"/>
        <gene id="377" protId="O84150" geneId="mhpA"/>
        <gene id="380" protId="O84633" geneId="ispA"/>
        <gene id="383" protId="O84381" geneId="mdh"/>
        <gene id="385" protId="P36424" geneId="grpE"/>
        <gene id="402" protId="O84548" geneId="CT_544"/>
        <gene id="405" protId="O84390" geneId="CT_385"/>
        <gene id="407" protId="O84611" geneId="CT_606"/>
        <gene id="409" protId="O84284" geneId="gcvH"/>
        <gene id="411" protId="O84618" geneId="folA"/>
        <gene id="413" protId="O84029" geneId="rpsP"/>
        <gene id="416" protId="O84496" geneId="glgC"/>
        <gene id="419" protId="P0CD80" geneId="recA"/>
        <gene id="421" protId="O84191" geneId="tmk"/>
        <gene id="423" protId="O84297" geneId="mrsA_1"/>
        <gene id="425" protId="P0CE02" geneId="rpsJ"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="C.trachomatis" link="http://www.uniprot.org/taxonomy/272561"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="768"/>
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        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="704"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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      <geneRef id="6">
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        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="674"/>
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        <score id="bootstrap" value="0.6"/>
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        <score id="bootstrap" value="0.99"/>
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    </orthologGroup>
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        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="10">
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        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="0.98"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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    </orthologGroup>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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      <score id="bit" value="419"/>
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="20">
      <score id="bit" value="388"/>
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      <geneRef id="42">
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    <orthologGroup id="21">
      <score id="bit" value="374"/>
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="22">
      <score id="bit" value="372"/>
      <geneRef id="45">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="46">
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="23">
      <score id="bit" value="353"/>
      <geneRef id="47">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="48">
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="24">
      <score id="bit" value="346"/>
      <geneRef id="49">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.97"/>
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      <geneRef id="50">
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        <score id="bootstrap" value="1"/>
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    <orthologGroup id="25">
      <score id="bit" value="344"/>
      <geneRef id="51">
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        <score id="bootstrap" value="1"/>
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      <score id="bit" value="335"/>
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        <score id="bootstrap" value="1"/>
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      <score id="bit" value="334"/>
      <geneRef id="55">
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