<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="4408" inparalogs="9762"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Apis mellifera " NCBITaxId="7460">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="5" protId="H9K0G7" geneId="Dhc64C-like"/>
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        <gene id="9" protId="H9K470" geneId="uncharacterized_H9K470"/>
        <gene id="11" protId="H9KDK1" geneId="uncharacterized_H9KDK1"/>
        <gene id="13" protId="H9K2N5" geneId="beta-Spec"/>
        <gene id="15" protId="H9KR42" geneId="uncharacterized_H9KR42"/>
        <gene id="17" protId="H9JZ07" geneId="uncharacterized_H9JZ07"/>
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        <gene id="20" protId="H9K076" geneId="Ame.15895"/>
        <gene id="22" protId="H9K979" geneId="Ame.1605"/>
        <gene id="24" protId="H9KQR0" geneId="LOC550716"/>
        <gene id="26" protId="H9KKV9" geneId="LOC551272"/>
        <gene id="28" protId="H9K740" geneId="uncharacterized_H9K740"/>
        <gene id="30" protId="H9KME6" geneId="LOC551848"/>
        <gene id="32" protId="H9KTC6" geneId="plexA"/>
        <gene id="33" protId="H9KGP3" geneId="uncharacterized_H9KGP3"/>
        <gene id="35" protId="H9K606" geneId="uncharacterized_H9K606"/>
        <gene id="37" protId="H9KIE5" geneId="uncharacterized_H9KIE5"/>
        <gene id="39" protId="H9KNI2" geneId="LOC551182"/>
        <gene id="41" protId="H9KPN4" geneId="CNOT1"/>
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        <gene id="51" protId="H9K4U4" geneId="uncharacterized_H9K4U4"/>
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        <gene id="55" protId="H9K6S2" geneId="LOC411155"/>
        <gene id="57" protId="H9KI99" geneId="LOC551331"/>
        <gene id="59" protId="H9K5S1" geneId="sec71"/>
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        <gene id="73" protId="H9KIR0" geneId="uncharacterized_H9KIR0"/>
        <gene id="75" protId="H9KIU3" geneId="LOC725552"/>
        <gene id="77" protId="H9KK71" geneId="LOC100577456"/>
        <gene id="79" protId="H9KU31" geneId="Mhc1"/>
        <gene id="81" protId="H9KA83" geneId="LOC724747"/>
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        <gene id="85" protId="H9KIS0" geneId="LOC550940"/>
        <gene id="87" protId="H9KEA9" geneId="uncharacterized_H9KEA9"/>
        <gene id="89" protId="H9KE40" geneId="IGFn3-15"/>
        <gene id="91" protId="H9JZC0" geneId="Caps"/>
        <gene id="93" protId="H9K816" geneId="Ame.4092"/>
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        <gene id="101" protId="H9KGN7" geneId="uncharacterized_H9KGN7"/>
        <gene id="102" protId="H9KTN9" geneId="uncharacterized_H9KTN9"/>
        <gene id="104" protId="H9KT80" geneId="uncharacterized_H9KT80"/>
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        <gene id="107" protId="H9K085" geneId="Ame.16436"/>
        <gene id="109" protId="H9KSQ3" geneId="LOC100576959"/>
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        <gene id="113" protId="H9KCM7" geneId="RpIII128"/>
        <gene id="115" protId="H9KLG4" geneId="LOC410371"/>
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        <gene id="121" protId="H9KNG0" geneId="LOC412593"/>
        <gene id="123" protId="H9KU57" geneId="Taf1"/>
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        <gene id="126" protId="H9KD75" geneId="uncharacterized_H9KD75"/>
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        <gene id="132" protId="H9K035" geneId="LOC413341"/>
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        <gene id="170" protId="H9JYN3" geneId="faf"/>
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        <gene id="174" protId="H9KHW0" geneId="alpha-Adaptin"/>
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        <gene id="178" protId="H9KKX7" geneId="DNApol-delta"/>
        <gene id="180" protId="H9KC07" geneId="sl"/>
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        <gene id="184" protId="H9KAJ2" geneId="alphaCop"/>
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        <gene id="188" protId="H9JZW1" geneId="osm-1"/>
        <gene id="190" protId="H9K0L5" geneId="uncharacterized_H9K0L5"/>
        <gene id="192" protId="H9KIF2" geneId="Ugt"/>
        <gene id="194" protId="H9KLD1" geneId="LOC412059"/>
        <gene id="196" protId="H9KD21" geneId="uncharacterized_H9KD21"/>
        <gene id="198" protId="H9KGF5" geneId="LOC726187"/>
        <gene id="200" protId="H9KHG6" geneId="uncharacterized_H9KHG6"/>
        <gene id="202" protId="H9KSU4" geneId="LOC408810"/>
        <gene id="204" protId="H9KLW5" geneId="uncharacterized_H9KLW5"/>
        <gene id="206" protId="H9K2N6" geneId="uncharacterized_H9K2N6"/>
        <gene id="208" protId="H9KLB7" geneId="uncharacterized_H9KLB7"/>
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        <gene id="212" protId="H9KEH7" geneId="uncharacterized_H9KEH7"/>
        <gene id="214" protId="H9K5Z8" geneId="alpha-Cat"/>
        <gene id="216" protId="H9KDA4" geneId="rdgB"/>
        <gene id="218" protId="H9KQH2" geneId="LOC412741"/>
        <gene id="220" protId="H9K9C8" geneId="uncharacterized_H9K9C8"/>
        <gene id="222" protId="H9K6I6" geneId="beta'Cop"/>
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        <gene id="228" protId="H9K4A9" geneId="Dcr-1"/>
        <gene id="230" protId="H9JZU0" geneId="RhoGAPp190"/>
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        <gene id="236" protId="H9KK56" geneId="fliI"/>
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        <gene id="240" protId="Q5D184" geneId="EphR"/>
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        <gene id="248" protId="H9K6Q9" geneId="LOC410777"/>
        <gene id="250" protId="H9KJ58" geneId="uncharacterized_H9KJ58"/>
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        <gene id="264" protId="H9KSM7" geneId="LOC727407"/>
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        <gene id="275" protId="H9KFG3" geneId="LOC412159"/>
        <gene id="277" protId="H9KED5" geneId="LOC552074"/>
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        <gene id="299" protId="H9KHU4" geneId="hay"/>
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        <gene id="303" protId="H9KK61" geneId="LOC413425"/>
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        <gene id="309" protId="H9K5R6" geneId="arm"/>
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        <gene id="9640" protId="H9K8N2" geneId="Ada"/>
        <gene id="9642" protId="H9KUL9" geneId="LOC726277"/>
        <gene id="9644" protId="H9KAK0" geneId="uncharacterized_H9KAK0"/>
        <gene id="9646" protId="H9K4G5" geneId="Ame.16625"/>
        <gene id="9663" protId="H9KNB8" geneId="CPR20"/>
        <gene id="9676" protId="H9K6R4" geneId="LOC725739"/>
        <gene id="9677" protId="H9KCV9" geneId="uncharacterized_H9KCV9"/>
        <gene id="9679" protId="H9K872" geneId="LOC100577582"/>
        <gene id="9681" protId="H9K0A7" geneId="Grx1"/>
        <gene id="9683" protId="H9K2A0" geneId="LOC409404"/>
        <gene id="9685" protId="H9K168" geneId="uncharacterized_H9K168"/>
        <gene id="9687" protId="H9K0R9" geneId="LOC725753"/>
        <gene id="9693" protId="H9K377" geneId="mRpL1"/>
        <gene id="9695" protId="H9KPN2" geneId="Ame.7640"/>
        <gene id="9697" protId="H9KMF2" geneId="Metrn"/>
        <gene id="9700" protId="H9JYX2" geneId="LOC100576974"/>
        <gene id="9702" protId="H9JZ08" geneId="Pbp49"/>
        <gene id="9704" protId="H9KST3" geneId="LOC100576381"/>
        <gene id="9706" protId="H9KN46" geneId="LOC724895"/>
        <gene id="9708" protId="H9K3N4" geneId="LOC724329"/>
        <gene id="9710" protId="H9KMS9" geneId="LOC100577346"/>
        <gene id="9711" protId="H9KPK3" geneId="uncharacterized_H9KPK3"/>
        <gene id="9712" protId="H9JZY7" geneId="DEG5"/>
        <gene id="9713" protId="H9KPD4" geneId="DEG6"/>
        <gene id="9716" protId="H9KGU9" geneId="CPR7"/>
        <gene id="9718" protId="H9KHU5" geneId="uncharacterized_H9KHU5"/>
        <gene id="9720" protId="H9K521" geneId="LOC409645"/>
        <gene id="9722" protId="H9KKB6" geneId="uncharacterized_H9KKB6"/>
        <gene id="9724" protId="H9KQ86" geneId="LOC551381"/>
        <gene id="9726" protId="H9KMU9" geneId="uncharacterized_H9KMU9"/>
        <gene id="9727" protId="H9KKD9" geneId="uncharacterized_H9KKD9"/>
        <gene id="9730" protId="H9KM26" geneId="Ndufs5"/>
        <gene id="9732" protId="H9KI21" geneId="uncharacterized_H9KI21"/>
        <gene id="9739" protId="H9KHB1" geneId="LOC725315"/>
        <gene id="9741" protId="H9K5S2" geneId="uncharacterized_H9K5S2"/>
        <gene id="9743" protId="H9KGJ8" geneId="uncharacterized_H9KGJ8"/>
        <gene id="9747" protId="H9KDQ8" geneId="LOC413366"/>
        <gene id="9750" protId="H9K237" geneId="uncharacterized_H9K237"/>
        <gene id="9752" protId="H9KAY7" geneId="uncharacterized_H9KAY7"/>
        <gene id="9754" protId="H9KBW9" geneId="uncharacterized_H9KBW9"/>
        <gene id="9755" protId="H9KR94" geneId="uncharacterized_H9KR94"/>
        <gene id="9756" protId="H9KAL8" geneId="uncharacterized_H9KAL8"/>
        <gene id="9757" protId="H9KHA1" geneId="Ame.29582"/>
        <gene id="9759" protId="H9KP67" geneId="uncharacterized_H9KP67"/>
        <gene id="9761" protId="H9KE70" geneId="ppa"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="A.mellifera" link="http://www.uniprot.org/taxonomy/7460"/>
    </notes>
  </species>
  <species name="Ixodes scapularis " NCBITaxId="6945">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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    <notes>
      <additionalInformation abbreviation="I.scapularis" link="http://www.uniprot.org/taxonomy/6945"/>
    </notes>
  </species>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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