<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="593" inparalogs="2089"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ailuropoda melanoleuca " NCBITaxId="9646">
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        <gene id="1862" protId="G1L5J4" geneId="LOC100474927"/>
        <gene id="1863" protId="G1MP64" geneId="uncharacterized_G1MP64"/>
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        <gene id="1866" protId="G1LGN0" geneId="uncharacterized_G1LGN0"/>
        <gene id="1867" protId="G1MMK0" geneId="uncharacterized_G1MMK0"/>
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        <gene id="1870" protId="D2GXQ1" geneId="PTRHD1"/>
        <gene id="1872" protId="G1L2J9" geneId="PRUNE"/>
        <gene id="1874" protId="D2GUW1" geneId="HMGB2"/>
        <gene id="1875" protId="G1LQK7" geneId="LOC100467802"/>
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        <gene id="1877" protId="G1LYU2" geneId="LOC100476851"/>
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        <gene id="1879" protId="G1LQE5" geneId="uncharacterized_G1LQE5"/>
        <gene id="1881" protId="G1MGJ9" geneId="LOC100464522"/>
        <gene id="1882" protId="D2GUA6" geneId="ATP6V1E2"/>
        <gene id="1883" protId="G1LGZ4" geneId="uncharacterized_G1LGZ4"/>
        <gene id="1885" protId="F2X282" geneId="Rpl35A"/>
        <gene id="1886" protId="D2HHB4" geneId="LOC100468924"/>
        <gene id="1887" protId="D2GY26" geneId="LOC100476943"/>
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        <gene id="1892" protId="G1MHR0" geneId="MBOAT1"/>
        <gene id="1893" protId="D2HIZ8" geneId="LPCAT3"/>
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        <gene id="1895" protId="D2HYQ9" geneId="MBOAT7"/>
        <gene id="1897" protId="D2I002" geneId="SLC41A1"/>
        <gene id="1898" protId="D2H1T6" geneId="SLC41A2"/>
        <gene id="1899" protId="G1L3C4" geneId="LOC100469210"/>
        <gene id="1901" protId="G1L9Z2" geneId="TRA2A"/>
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        <gene id="1904" protId="D2HX74" geneId="TIMM50"/>
        <gene id="1906" protId="G1L529" geneId="DUT"/>
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        <gene id="1912" protId="D2H0I3" geneId="EXOSC3"/>
        <gene id="1914" protId="D2GWS3" geneId="ATP6V1F"/>
        <gene id="1916" protId="G1LJ26" geneId="PSMC3IP"/>
        <gene id="1918" protId="G1LGQ0" geneId="uncharacterized_G1LGQ0"/>
        <gene id="1919" protId="G1L1U5" geneId="PIP5K1A"/>
        <gene id="1920" protId="G1LCG2" geneId="PIP4K2B"/>
        <gene id="1921" protId="G1LIA1" geneId="PIP4K2A"/>
        <gene id="1922" protId="G1LEV8" geneId="uncharacterized_G1LEV8"/>
        <gene id="1924" protId="G1MGJ0" geneId="P4HB"/>
        <gene id="1925" protId="G1LKB4" geneId="PDIA2"/>
        <gene id="1926" protId="G1LQU1" geneId="PDILT"/>
        <gene id="1927" protId="G1L7R2" geneId="PDIA4"/>
        <gene id="1928" protId="D2GW48" geneId="PDIA3"/>
        <gene id="1930" protId="G1LU36" geneId="ABHD12B"/>
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        <gene id="1935" protId="G1M561" geneId="TMEM241"/>
        <gene id="1937" protId="D2HJP6" geneId="LOC100467199"/>
        <gene id="1938" protId="G1LL23" geneId="RPS27L"/>
        <gene id="1940" protId="D2HGA9" geneId="N6AMT1"/>
        <gene id="1942" protId="G1M5L3" geneId="LRRC23"/>
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        <gene id="1946" protId="G1LYG7" geneId="UTP15"/>
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        <gene id="1953" protId="D2HL47" geneId="AP2S1"/>
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        <gene id="1956" protId="G1MH83" geneId="uncharacterized_G1MH83"/>
        <gene id="1957" protId="G1MF77" geneId="AP3S1"/>
        <gene id="1959" protId="D2HTM8" geneId="SLC39A3"/>
        <gene id="1960" protId="D2HJQ0" geneId="SLC39A1"/>
        <gene id="1961" protId="G1LJ52" geneId="SLC39A2"/>
        <gene id="1963" protId="D2GWN7" geneId="GINS2"/>
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        <gene id="1967" protId="G1MP05" geneId="SENP8"/>
        <gene id="1969" protId="G1LHK9" geneId="RPS20"/>
        <gene id="1970" protId="G1MLC2" geneId="LOC100463721"/>
        <gene id="1972" protId="G1M5K7" geneId="EIF4E"/>
        <gene id="1973" protId="G1LKW6" geneId="EIF4E1B"/>
        <gene id="1975" protId="G1MHD9" geneId="HINT1"/>
        <gene id="1976" protId="G1LTN1" geneId="HINT2"/>
        <gene id="1978" protId="G1LIR9" geneId="LSM2"/>
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        <gene id="1986" protId="D2HWR3" geneId="POLR1D"/>
        <gene id="1987" protId="G1MAF0" geneId="POLR2J"/>
        <gene id="1989" protId="D2GWJ7" geneId="RPA2"/>
        <gene id="1991" protId="D2HC18" geneId="BRIX1"/>
        <gene id="1993" protId="G1LXB6" geneId="LSM1"/>
        <gene id="1995" protId="G1LZ44" geneId="POLR2D"/>
        <gene id="1997" protId="G1M2H4" geneId="TCEB1"/>
        <gene id="1999" protId="G1M9J7" geneId="uncharacterized_G1M9J7"/>
        <gene id="2000" protId="D2HMH9" geneId="RAX2"/>
        <gene id="2001" protId="G1L440" geneId="ISX"/>
        <gene id="2002" protId="D2GVC0" geneId="HOXA4"/>
        <gene id="2003" protId="G1LG72" geneId="PHOX2A"/>
        <gene id="2004" protId="G1L0R5" geneId="ESX1"/>
        <gene id="2005" protId="G1LR81" geneId="PROP1"/>
        <gene id="2007" protId="G1MMR7" geneId="LOC100466960"/>
        <gene id="2008" protId="G1LTF5" geneId="NUDT4"/>
        <gene id="2009" protId="G1L2I6" geneId="NUDT3"/>
        <gene id="2011" protId="G1M1C9" geneId="RNFT2"/>
        <gene id="2012" protId="G1LY19" geneId="RNFT1"/>
        <gene id="2014" protId="D2GWG2" geneId="ZNF593"/>
        <gene id="2016" protId="D2HZS4" geneId="RPS28"/>
        <gene id="2018" protId="G1LXD8" geneId="LSM4"/>
        <gene id="2019" protId="G1M5R9" geneId="SNRPD3"/>
        <gene id="2021" protId="G1M5D6" geneId="CCNI"/>
        <gene id="2022" protId="G1MHB1" geneId="uncharacterized_G1MHB1"/>
        <gene id="2023" protId="D2I3M2" geneId="CCNG2"/>
        <gene id="2024" protId="D2HVU6" geneId="CCNG1"/>
        <gene id="2027" protId="G1MBM4" geneId="GLRX2"/>
        <gene id="2028" protId="D2HYF9" geneId="GLRX"/>
        <gene id="2030" protId="G1MJ34" geneId="LOC100465378"/>
        <gene id="2031" protId="G1L8W9" geneId="uncharacterized_G1L8W9"/>
        <gene id="2033" protId="G1MAW9" geneId="POLR3H"/>
        <gene id="2035" protId="G1MK20" geneId="FBXL14"/>
        <gene id="2036" protId="G1L6N0" geneId="FBXL2"/>
        <gene id="2037" protId="G1LBH0" geneId="FBXL20"/>
        <gene id="2038" protId="D2H712" geneId="FBXL7"/>
        <gene id="2039" protId="G1L3D3" geneId="LOC100465739"/>
        <gene id="2040" protId="G1LLD6" geneId="LOC100475472"/>
        <gene id="2041" protId="G1MG08" geneId="uncharacterized_G1MG08"/>
        <gene id="2043" protId="D2HM46" geneId="HOXC6"/>
        <gene id="2044" protId="G1LH22" geneId="HOXA6"/>
        <gene id="2045" protId="D2H568" geneId="HOXB6"/>
        <gene id="2046" protId="G1LH14" geneId="uncharacterized_G1LH14"/>
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        <gene id="2048" protId="D2HM45" geneId="HOXC8"/>
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        <gene id="2052" protId="G1M9A7" geneId="EIF4E3"/>
        <gene id="2054" protId="G1MBP8" geneId="SEC61G"/>
        <gene id="2056" protId="G1M1S9" geneId="SRP19"/>
        <gene id="2058" protId="G1L463" geneId="TARS2"/>
        <gene id="2059" protId="G1L8R1" geneId="uncharacterized_G1L8R1"/>
        <gene id="2060" protId="G1L9U5" geneId="uncharacterized_G1L9U5"/>
        <gene id="2062" protId="G1LEA3" geneId="DUXA"/>
        <gene id="2063" protId="G1LFE0" geneId="uncharacterized_G1LFE0"/>
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        <gene id="2067" protId="G1MB80" geneId="LOC100472337"/>
        <gene id="2069" protId="D2I4T5" geneId="HIST3H2A"/>
        <gene id="2070" protId="D2I097" geneId="LOC100469703"/>
        <gene id="2071" protId="D2I4V5" geneId="LOC100466877"/>
        <gene id="2072" protId="D2HWJ3" geneId="HIST1H2AM"/>
        <gene id="2073" protId="D2HWI0" geneId="LOC100468944"/>
        <gene id="2074" protId="G1MMV7" geneId="HIST1H2AD"/>
        <gene id="2075" protId="G1MMS9" geneId="HIST1H2AE"/>
        <gene id="2076" protId="G1MNQ3" geneId="LOC100466688"/>
        <gene id="2077" protId="G1LU90" geneId="LOC100465958"/>
        <gene id="2078" protId="G1LU76" geneId="HIST2H2AC"/>
        <gene id="2079" protId="G1MNR7" geneId="H2AFJ"/>
        <gene id="2080" protId="D2H2K0" geneId="HIST1H2AA"/>
        <gene id="2081" protId="G1MNP4" geneId="LOC100468629"/>
        <gene id="2082" protId="G1LTV1" geneId="uncharacterized_G1LTV1"/>
        <gene id="2083" protId="G1MHG7" geneId="H2AFV"/>
        <gene id="2084" protId="D2HYT9" geneId="H2AFZ"/>
        <gene id="2085" protId="G1MM28" geneId="LOC100463617"/>
        <gene id="2086" protId="G1MMX8" geneId="LOC100471743"/>
        <gene id="2088" protId="D2HI87" geneId="TRAPPC5"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="A.melanoleuca" link="http://www.uniprot.org/taxonomy/9646"/>
    </notes>
  </species>
  <species name="Vittaforma corneae " NCBITaxId="993615">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="1964" protId="L2GN83" geneId="VICG_00691"/>
        <gene id="1966" protId="L2GJI3" geneId="VICG_01903"/>
        <gene id="1968" protId="L2GKE4" geneId="VICG_01593"/>
        <gene id="1971" protId="L2GQJ8" geneId="VICG_00219"/>
        <gene id="1974" protId="L2GN55" geneId="VICG_00660"/>
        <gene id="1977" protId="L2GKN9" geneId="VICG_01783"/>
        <gene id="1979" protId="L2GP92" geneId="VICG_00735"/>
        <gene id="1981" protId="L2GMB0" geneId="VICG_00998"/>
        <gene id="1983" protId="L2GN53" geneId="VICG_00728"/>
        <gene id="1985" protId="L2GLV4" geneId="VICG_01469"/>
        <gene id="1988" protId="L2GPU8" geneId="VICG_00181"/>
        <gene id="1990" protId="L2GL57" geneId="VICG_01919"/>
        <gene id="1992" protId="L2GNY8" geneId="VICG_00303"/>
        <gene id="1994" protId="L2GPR6" geneId="VICG_00599"/>
        <gene id="1996" protId="L2GPM4" geneId="VICG_00158"/>
        <gene id="1998" protId="L2GMR4" geneId="VICG_00831"/>
        <gene id="2006" protId="L2GNI4" geneId="VICG_00500"/>
        <gene id="2010" protId="L2GLS3" geneId="VICG_01148"/>
        <gene id="2013" protId="L2GJC3" geneId="VICG_01996"/>
        <gene id="2015" protId="L2GN48" geneId="VICG_00723"/>
        <gene id="2017" protId="L2GK71" geneId="VICG_01651"/>
        <gene id="2020" protId="L2GMT0" geneId="VICG_00846"/>
        <gene id="2025" protId="L2GKU6" geneId="VICG_01743"/>
        <gene id="2026" protId="L2GK78" geneId="VICG_01740"/>
        <gene id="2029" protId="L2GN26" geneId="VICG_00871"/>
        <gene id="2032" protId="L2GM94" geneId="VICG_01343"/>
        <gene id="2034" protId="L2GPP6" geneId="VICG_00126"/>
        <gene id="2042" protId="L2GQL3" geneId="VICG_00125"/>
        <gene id="2049" protId="L2GN12" geneId="VICG_01325"/>
        <gene id="2053" protId="L2GK52" geneId="VICG_01968"/>
        <gene id="2055" protId="L2GK69" geneId="VICG_01906"/>
        <gene id="2057" protId="L2GPN4" geneId="VICG_00168"/>
        <gene id="2061" protId="L2GKL1" geneId="VICG_01632"/>
        <gene id="2064" protId="L2GLP0" geneId="VICG_01265"/>
        <gene id="2066" protId="L2GQN2" geneId="VICG_00369"/>
        <gene id="2068" protId="L2GND9" geneId="VICG_01184"/>
        <gene id="2087" protId="L2GKW7" geneId="VICG_01819"/>
        <gene id="2089" protId="L2GKG8" geneId="VICG_01964"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="V.corneae" link="http://www.uniprot.org/taxonomy/993615"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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