<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="323" inparalogs="949"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ailuropoda melanoleuca " NCBITaxId="9646">
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        <gene id="4" protId="G1L4R0" geneId="LOC100465885"/>
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        <gene id="8" protId="G1LRV4" geneId="ACSS2"/>
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        <gene id="13" protId="D2H363" geneId="ATP5B"/>
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        <gene id="22" protId="G1LI27" geneId="uncharacterized_G1LI27"/>
        <gene id="24" protId="G1LU50" geneId="LOC100474134"/>
        <gene id="26" protId="G1M128" geneId="LONP1"/>
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        <gene id="159" protId="G1M243" geneId="uncharacterized_G1M243"/>
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        <gene id="480" protId="G1LZL4" geneId="uncharacterized_G1LZL4"/>
        <gene id="482" protId="G1L3J2" geneId="TATDN3"/>
        <gene id="484" protId="G1LDF4" geneId="TMCO3"/>
        <gene id="486" protId="G1M3Z7" geneId="uncharacterized_G1M3Z7"/>
        <gene id="488" protId="G1MPL2" geneId="uncharacterized_G1MPL2"/>
        <gene id="489" protId="D2HSW2" geneId="SEPHS1"/>
        <gene id="491" protId="G1L5A7" geneId="GTPBP6"/>
        <gene id="493" protId="G1L6B9" geneId="C14orf101"/>
        <gene id="495" protId="G1LTN3" geneId="ATP5C1"/>
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        <gene id="501" protId="G1L321" geneId="NDUFS8"/>
        <gene id="503" protId="G1LH06" geneId="DTD1"/>
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        <gene id="509" protId="G1LM86" geneId="HDAC1"/>
        <gene id="510" protId="G1LVB1" geneId="HDAC3"/>
        <gene id="511" protId="G1LGX4" geneId="LOC100480623"/>
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        <gene id="515" protId="G1LSH7" geneId="LOC100470873"/>
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        <gene id="518" protId="G1LR43" geneId="ADCK3"/>
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        <gene id="527" protId="G1M1C2" geneId="FARSA"/>
        <gene id="529" protId="G1LYI9" geneId="HEMK1"/>
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        <gene id="538" protId="Q33784" geneId="MT-CYB"/>
        <gene id="540" protId="G1LKI5" geneId="NME4"/>
        <gene id="541" protId="G1LPV6" geneId="LOC100481082"/>
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        <gene id="545" protId="D2HGZ5" geneId="MRPL4"/>
        <gene id="547" protId="G1MCX0" geneId="uncharacterized_G1MCX0"/>
        <gene id="549" protId="G1L3H1" geneId="LOC100479910"/>
        <gene id="550" protId="D2H3W9" geneId="LOC100480823"/>
        <gene id="551" protId="G1LIX3" geneId="PRTFDC1"/>
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        <gene id="558" protId="Q534B1" geneId="MT-ND2"/>
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        <gene id="563" protId="G1LRU0" geneId="MRPS7"/>
        <gene id="565" protId="D2I5D7" geneId="COQ5"/>
        <gene id="567" protId="G1M1M2" geneId="uncharacterized_G1M1M2"/>
        <gene id="569" protId="D2HB01" geneId="TMPPE"/>
        <gene id="571" protId="G1LQ39" geneId="MRPS12"/>
        <gene id="573" protId="D2H7J3" geneId="LOC100481493"/>
        <gene id="574" protId="G1MP63" geneId="LOC100480804"/>
        <gene id="576" protId="G1MH61" geneId="LOC100470292"/>
        <gene id="577" protId="G1M338" geneId="uncharacterized_G1M338"/>
        <gene id="579" protId="G1LXY6" geneId="MRPL11"/>
        <gene id="581" protId="G1L3M5" geneId="CUTA"/>
        <gene id="582" protId="G1L2Y4" geneId="uncharacterized_G1L2Y4"/>
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        <gene id="585" protId="G1LWC9" geneId="HARS2"/>
        <gene id="587" protId="G1LP01" geneId="RNMTL1"/>
        <gene id="589" protId="G1LM91" geneId="NDUFS3"/>
        <gene id="591" protId="G1MA08" geneId="uncharacterized_G1MA08"/>
        <gene id="593" protId="G1MEJ1" geneId="SLC16A12"/>
        <gene id="594" protId="D2HND2" geneId="SLC16A7"/>
        <gene id="595" protId="G1MD27" geneId="SLC16A13"/>
        <gene id="596" protId="G1L9S3" geneId="uncharacterized_G1L9S3"/>
        <gene id="597" protId="D2H6U6" geneId="SLC16A14"/>
        <gene id="598" protId="G1MD36" geneId="LOC100471783"/>
        <gene id="599" protId="G1MFT0" geneId="LOC100477775"/>
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        <gene id="604" protId="D2H0V7" geneId="SLC16A9"/>
        <gene id="605" protId="G1LV32" geneId="uncharacterized_G1LV32"/>
        <gene id="606" protId="D2I3S0" geneId="SLC16A10"/>
        <gene id="607" protId="G1L7X1" geneId="SLC16A2"/>
        <gene id="609" protId="G1M295" geneId="MRPS11"/>
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        <gene id="625" protId="G1LDA6" geneId="SLC5A10"/>
        <gene id="626" protId="G1LQQ2" geneId="uncharacterized_G1LQQ2"/>
        <gene id="627" protId="G1MDA1" geneId="LOC100482633"/>
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        <gene id="629" protId="G1LWN9" geneId="LOC100476368"/>
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        <gene id="699" protId="G1LF73" geneId="ATPBD4"/>
        <gene id="701" protId="G1LLX9" geneId="LOC100468506"/>
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        <gene id="761" protId="G1M9D4" geneId="uncharacterized_G1M9D4"/>
        <gene id="763" protId="G1MAY8" geneId="LOC100469424"/>
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        <gene id="768" protId="G1LPD0" geneId="HAGH"/>
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        <gene id="772" protId="G1MB77" geneId="uncharacterized_G1MB77"/>
        <gene id="773" protId="G1LPS6" geneId="uncharacterized_G1LPS6"/>
        <gene id="774" protId="G1LC05" geneId="NMNAT1"/>
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        <gene id="777" protId="G1L8T7" geneId="PPP3CC"/>
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        <gene id="780" protId="G1L1P7" geneId="LOC100464499"/>
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        <gene id="782" protId="D2HX48" geneId="PPP4C"/>
        <gene id="783" protId="G1LET8" geneId="PPP1CB"/>
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        <gene id="794" protId="G1LEF8" geneId="LOC100471159"/>
        <gene id="796" protId="G1LLY6" geneId="PDF"/>
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        <gene id="823" protId="D2HDI2" geneId="LOC100476896"/>
        <gene id="824" protId="G1MLJ6" geneId="uncharacterized_G1MLJ6"/>
        <gene id="825" protId="G1MKD4" geneId="LOC100473506"/>
        <gene id="827" protId="G1L9T5" geneId="MALSU1"/>
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        <gene id="833" protId="D2HSY4" geneId="LOC100474736"/>
        <gene id="834" protId="G1LN38" geneId="uncharacterized_G1LN38"/>
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        <gene id="837" protId="G1LC83" geneId="PPP2R1B"/>
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        <gene id="845" protId="G1L981" geneId="LOC100476845"/>
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        <gene id="850" protId="G1MEV2" geneId="MRPS16"/>
        <gene id="852" protId="G1M780" geneId="uncharacterized_G1M780"/>
        <gene id="853" protId="G1LMG0" geneId="uncharacterized_G1LMG0"/>
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        <gene id="857" protId="D2GWC5" geneId="RPL11"/>
        <gene id="859" protId="G1L2X0" geneId="YRDC"/>
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        <gene id="864" protId="G1M8X9" geneId="CALB1"/>
        <gene id="865" protId="D2H2K4" geneId="SCGN"/>
        <gene id="867" protId="G1MF88" geneId="RPS3"/>
        <gene id="868" protId="G1LL71" geneId="uncharacterized_G1LL71"/>
        <gene id="870" protId="D2HG10" geneId="RNASEH2A"/>
        <gene id="872" protId="G1LBC1" geneId="PTS"/>
        <gene id="874" protId="G1LCH4" geneId="LOC100476521"/>
        <gene id="876" protId="G1LTF5" geneId="NUDT4"/>
        <gene id="877" protId="G1MMR7" geneId="LOC100466960"/>
        <gene id="878" protId="G1L2I6" geneId="NUDT3"/>
        <gene id="880" protId="G1L5R2" geneId="uncharacterized_G1L5R2"/>
        <gene id="882" protId="G1M3J1" geneId="DDX52"/>
        <gene id="883" protId="G1MHP6" geneId="LOC100466136"/>
        <gene id="884" protId="D2HWT0" geneId="DDX23"/>
        <gene id="885" protId="G1LVR2" geneId="LOC100482324"/>
        <gene id="886" protId="D2HNZ5" geneId="DDX24"/>
        <gene id="887" protId="G1M4Z3" geneId="DDX51"/>
        <gene id="888" protId="G1MI16" geneId="uncharacterized_G1MI16"/>
        <gene id="889" protId="G1MI27" geneId="DDX50"/>
        <gene id="891" protId="G1L2J9" geneId="PRUNE"/>
        <gene id="893" protId="D2HEL7" geneId="RPS15A"/>
        <gene id="894" protId="D2GX76" geneId="LOC100463629"/>
        <gene id="895" protId="D2GZ12" geneId="LOC100477534"/>
        <gene id="896" protId="D2HYG4" geneId="LOC100479276"/>
        <gene id="897" protId="D2H6T4" geneId="LOC100469578"/>
        <gene id="899" protId="G1LVW5" geneId="DMC1"/>
        <gene id="900" protId="G1MF01" geneId="LOC100483725"/>
        <gene id="901" protId="G1MII3" geneId="XRCC3"/>
        <gene id="903" protId="G1L2V0" geneId="RBKS"/>
        <gene id="905" protId="G1LSS4" geneId="FOXRED2"/>
        <gene id="907" protId="G1LBU4" geneId="ISCA1"/>
        <gene id="909" protId="G1LMZ8" geneId="APIP"/>
        <gene id="911" protId="D2HRN7" geneId="RPL9"/>
        <gene id="912" protId="G1LAE2" geneId="uncharacterized_G1LAE2"/>
        <gene id="913" protId="G1LEW9" geneId="uncharacterized_G1LEW9"/>
        <gene id="915" protId="D3YC01" geneId="RPS11"/>
        <gene id="916" protId="G1LSD9" geneId="uncharacterized_G1LSD9"/>
        <gene id="917" protId="G1MP29" geneId="uncharacterized_G1MP29"/>
        <gene id="919" protId="G1LST3" geneId="uncharacterized_G1LST3"/>
        <gene id="920" protId="G1LDS4" geneId="uncharacterized_G1LDS4"/>
        <gene id="921" protId="G1LSR0" geneId="uncharacterized_G1LSR0"/>
        <gene id="923" protId="G1MCI3" geneId="BPGM"/>
        <gene id="924" protId="D2H5L1" geneId="PGAM4"/>
        <gene id="925" protId="G1MGM4" geneId="PGAM2"/>
        <gene id="927" protId="D2HGH0" geneId="RSAD2"/>
        <gene id="930" protId="G1MJ31" geneId="ACYP1"/>
        <gene id="931" protId="G1LCS9" geneId="LOC100478390"/>
        <gene id="933" protId="D2HUZ0" geneId="B3GNTL1"/>
        <gene id="935" protId="G1L551" geneId="IDI1"/>
        <gene id="937" protId="G1LCH8" geneId="LOC100471257"/>
        <gene id="941" protId="D2HQS8" geneId="CDS2"/>
        <gene id="942" protId="G1LAF9" geneId="CDS1"/>
        <gene id="944" protId="G1LXY2" geneId="LOC100471281"/>
        <gene id="946" protId="G1MAV9" geneId="TSTD1"/>
        <gene id="947" protId="G1LQT6" geneId="LOC100475923"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="A.melanoleuca" link="http://www.uniprot.org/taxonomy/9646"/>
    </notes>
  </species>
  <species name="Thermodesulfovibrio yellowstonii " NCBITaxId="289376">
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    <notes>
      <additionalInformation abbreviation="T.yellowstonii" link="http://www.uniprot.org/taxonomy/289376"/>
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