<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="4623" inparalogs="11855"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ailuropoda melanoleuca " NCBITaxId="9646">
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        <gene id="5" protId="G1MEZ7" geneId="LOC100476836"/>
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        <gene id="11" protId="G1LZ89" geneId="LOC100464388"/>
        <gene id="13" protId="G1L857" geneId="RYR2"/>
        <gene id="14" protId="G1MB90" geneId="RYR3"/>
        <gene id="15" protId="G1LUS3" geneId="LOC100471044"/>
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        <gene id="23" protId="G1MA68" geneId="uncharacterized_G1MA68"/>
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        <gene id="35" protId="G1M4G3" geneId="LOC100474573"/>
        <gene id="36" protId="G1MDP5" geneId="LOC100474644"/>
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        <gene id="11582" protId="G1MG80" geneId="LOC100469476"/>
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        <gene id="11586" protId="G1MLU3" geneId="uncharacterized_G1MLU3"/>
        <gene id="11587" protId="G1LB54" geneId="LOC100481701"/>
        <gene id="11588" protId="G1MLK1" geneId="RFPL4B"/>
        <gene id="11589" protId="G1M901" geneId="uncharacterized_G1M901"/>
        <gene id="11591" protId="G1LUZ9" geneId="CYGB"/>
        <gene id="11592" protId="D2HDV1" geneId="LOC100471516"/>
        <gene id="11596" protId="D2H2Q3" geneId="NDUFB3"/>
        <gene id="11598" protId="G1L9U7" geneId="uncharacterized_G1L9U7"/>
        <gene id="11600" protId="G1LB65" geneId="TMIGD1"/>
        <gene id="11602" protId="G1LHH7" geneId="RPAIN"/>
        <gene id="11604" protId="G1MEM9" geneId="RNF212"/>
        <gene id="11606" protId="G1M5C9" geneId="uncharacterized_G1M5C9"/>
        <gene id="11608" protId="G1L1B0" geneId="LIN37"/>
        <gene id="11610" protId="G1LPJ6" geneId="LOC100484181"/>
        <gene id="11612" protId="G1LKN4" geneId="FAM195A"/>
        <gene id="11614" protId="G1LVT6" geneId="uncharacterized_G1LVT6"/>
        <gene id="11616" protId="G1LAR9" geneId="LOC100478455"/>
        <gene id="11617" protId="G1LAI7" geneId="uncharacterized_G1LAI7"/>
        <gene id="11618" protId="D2H396" geneId="PANDA_004148"/>
        <gene id="11619" protId="G1LAI6" geneId="uncharacterized_G1LAI6"/>
        <gene id="11622" protId="G1M045" geneId="LOC100476795"/>
        <gene id="11623" protId="G1M079" geneId="LBP"/>
        <gene id="11624" protId="G1M0E1" geneId="BPI"/>
        <gene id="11625" protId="G1MCG6" geneId="BPIFC"/>
        <gene id="11626" protId="G1M1Z4" geneId="PLTP"/>
        <gene id="11628" protId="D2HLI2" geneId="LOC100474052"/>
        <gene id="11632" protId="G1LYH5" geneId="CISH"/>
        <gene id="11633" protId="D2HHX8" geneId="SOCS2"/>
        <gene id="11634" protId="D2H9A2" geneId="SOCS3"/>
        <gene id="11636" protId="G1LPS3" geneId="uncharacterized_G1LPS3"/>
        <gene id="11637" protId="G1M6I5" geneId="LOC100480834"/>
        <gene id="11639" protId="G1LJC4" geneId="NINJ1"/>
        <gene id="11640" protId="G1LCK4" geneId="LOC100475541"/>
        <gene id="11642" protId="G1L8P7" geneId="LOC100477959"/>
        <gene id="11644" protId="G1LHI3" geneId="C10orf112"/>
        <gene id="11646" protId="G1LHB3" geneId="SLC22A24"/>
        <gene id="11648" protId="D2HAC5" geneId="MRPS26"/>
        <gene id="11650" protId="G1LQZ2" geneId="EDA"/>
        <gene id="11652" protId="G1M737" geneId="LOC100476169"/>
        <gene id="11654" protId="G1M4D3" geneId="RNF114"/>
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        <gene id="11656" protId="G1LTM1" geneId="RNF138"/>
        <gene id="11657" protId="G1MIL1" geneId="RNF166"/>
        <gene id="11659" protId="G1LMR9" geneId="SIVA1"/>
        <gene id="11661" protId="D2I0C2" geneId="TIMM8A"/>
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        <gene id="11664" protId="G1MBG4" geneId="PAIP2B"/>
        <gene id="11665" protId="G1LXX0" geneId="PAIP2"/>
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        <gene id="11670" protId="D2GXG8" geneId="LRRC20"/>
        <gene id="11672" protId="D2I533" geneId="CNTNAP2"/>
        <gene id="11674" protId="D2GW69" geneId="HAUS2"/>
        <gene id="11676" protId="G1LMZ5" geneId="LOC100467524"/>
        <gene id="11678" protId="G1M4V0" geneId="VWA1"/>
        <gene id="11693" protId="G1LBK9" geneId="LOC100478162"/>
        <gene id="11695" protId="G1M5N7" geneId="C1orf146"/>
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        <gene id="11701" protId="Q2L897" geneId="UQCRQ"/>
        <gene id="11703" protId="D2HBB5" geneId="THAP6"/>
        <gene id="11704" protId="D2H248" geneId="PANDA_003671"/>
        <gene id="11705" protId="G1MIH9" geneId="THAP5"/>
        <gene id="11708" protId="D2I239" geneId="PANDA_019417"/>
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        <gene id="11713" protId="G1LW80" geneId="LOC100467323"/>
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        <gene id="11715" protId="D2H7I1" geneId="TIGD2"/>
        <gene id="11716" protId="G1LJ38" geneId="LOC100475067"/>
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        <gene id="11750" protId="G1L0V5" geneId="MS4A2"/>
        <gene id="11755" protId="G1M2L0" geneId="LOC100478933"/>
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        <gene id="11759" protId="D2GV04" geneId="DDA1"/>
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        <gene id="11767" protId="D2GWD3" geneId="LOC100477779"/>
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        <gene id="11771" protId="G1LSF8" geneId="LOC100476639"/>
        <gene id="11773" protId="G1LT52" geneId="MAD2L2"/>
        <gene id="11775" protId="D2HTD4" geneId="COX6A2"/>
        <gene id="11776" protId="D2HA09" geneId="LOC100479884"/>
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        <gene id="11782" protId="G1L6A3" geneId="CUZD1"/>
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        <gene id="11786" protId="G1MCT5" geneId="uncharacterized_G1MCT5"/>
        <gene id="11788" protId="G1LS12" geneId="CENPM"/>
        <gene id="11790" protId="G1MBA8" geneId="LOC100474745"/>
        <gene id="11791" protId="G1MBC5" geneId="LOC100475005"/>
        <gene id="11792" protId="G1MH17" geneId="REG4"/>
        <gene id="11794" protId="G1L757" geneId="C3orf33"/>
        <gene id="11796" protId="G1L889" geneId="SCML1"/>
        <gene id="11798" protId="G1LUX6" geneId="uncharacterized_G1LUX6"/>
        <gene id="11800" protId="G1MHK9" geneId="CDKN2AIPNL"/>
        <gene id="11802" protId="G1M180" geneId="SYCE2"/>
        <gene id="11804" protId="G1M4W3" geneId="TMEM128"/>
        <gene id="11806" protId="G1LW64" geneId="CDKN1B"/>
        <gene id="11808" protId="G1MM53" geneId="HDGFL1"/>
        <gene id="11809" protId="G1L107" geneId="LOC100464120"/>
        <gene id="11811" protId="G1MFS2" geneId="C16orf80"/>
        <gene id="11813" protId="D2I454" geneId="PANDA_020350"/>
        <gene id="11814" protId="G1M0L8" geneId="LOC100471725"/>
        <gene id="11815" protId="G1M0L5" geneId="S100A12"/>
        <gene id="11816" protId="G1M0I1" geneId="S100A1"/>
        <gene id="11817" protId="D2HUK2" geneId="S100P"/>
        <gene id="11818" protId="G1L2S1" geneId="S100B"/>
        <gene id="11819" protId="D2HJR9" geneId="S100A8"/>
        <gene id="11820" protId="G1M0I8" geneId="LOC100465759"/>
        <gene id="11821" protId="D2HJR5" geneId="S100A4"/>
        <gene id="11822" protId="D2HDU5" geneId="S100G"/>
        <gene id="11823" protId="D2HJR7" geneId="LOC100466494"/>
        <gene id="11824" protId="D2HBQ5" geneId="S100A10"/>
        <gene id="11825" protId="G1M0J8" geneId="S100A5"/>
        <gene id="11826" protId="G1LC12" geneId="S100A11"/>
        <gene id="11827" protId="D2HJR0" geneId="S100A13"/>
        <gene id="11829" protId="G1LSC7" geneId="uncharacterized_G1LSC7"/>
        <gene id="11832" protId="G1MBE1" geneId="uncharacterized_G1MBE1"/>
        <gene id="11833" protId="G1MH57" geneId="EXOG"/>
        <gene id="11835" protId="G1M2G9" geneId="LOC100469212"/>
        <gene id="11837" protId="G1MGE7" geneId="LOC100482912"/>
        <gene id="11839" protId="G1LDR9" geneId="NELL1"/>
        <gene id="11840" protId="G1LKE3" geneId="NELL2"/>
        <gene id="11842" protId="G1LPJ9" geneId="SPINK2"/>
        <gene id="11844" protId="G1M3P0" geneId="LOC100464133"/>
        <gene id="11846" protId="G1L1W0" geneId="LOC100467451"/>
        <gene id="11847" protId="G1M274" geneId="APOO"/>
        <gene id="11849" protId="G1LBM7" geneId="RIMS4"/>
        <gene id="11850" protId="G1LZM1" geneId="RIMS3"/>
        <gene id="11852" protId="D2GXX9" geneId="USMG5"/>
        <gene id="11854" protId="G1LZV9" geneId="RPP14"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="A.melanoleuca" link="http://www.uniprot.org/taxonomy/9646"/>
    </notes>
  </species>
  <species name="Ciona savignyi " NCBITaxId="51511">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="4" protId="H2ZKA9" geneId="uncharacterized_H2ZKA9"/>
        <gene id="6" protId="H2ZI79" geneId="uncharacterized_H2ZI79"/>
        <gene id="8" protId="H2Y7L1" geneId="uncharacterized_H2Y7L1"/>
        <gene id="10" protId="H2ZMD8" geneId="uncharacterized_H2ZMD8"/>
        <gene id="12" protId="H2Z3M0" geneId="uncharacterized_H2Z3M0"/>
        <gene id="16" protId="H2Y884" geneId="uncharacterized_H2Y884"/>
        <gene id="18" protId="H2Z6X0" geneId="Csa.2876"/>
        <gene id="20" protId="H2ZEZ4" geneId="uncharacterized_H2ZEZ4"/>
        <gene id="22" protId="H2YAX9" geneId="uncharacterized_H2YAX9"/>
        <gene id="24" protId="H2ZL79" geneId="uncharacterized_H2ZL79"/>
        <gene id="26" protId="H2YPT6" geneId="uncharacterized_H2YPT6"/>
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        <gene id="30" protId="H2YKD6" geneId="uncharacterized_H2YKD6"/>
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        <gene id="34" protId="H2Z2M8" geneId="Csa.8388"/>
        <gene id="37" protId="H2YM65" geneId="uncharacterized_H2YM65"/>
        <gene id="41" protId="H2YYU4" geneId="uncharacterized_H2YYU4"/>
        <gene id="44" protId="H2ZQP9" geneId="Csa.5889"/>
        <gene id="46" protId="H2YUI7" geneId="Csa.4159"/>
        <gene id="48" protId="H2ZRC3" geneId="uncharacterized_H2ZRC3"/>
        <gene id="49" protId="H2ZG62" geneId="uncharacterized_H2ZG62"/>
        <gene id="51" protId="H2Y4C5" geneId="Csa.3786"/>
        <gene id="53" protId="H2Z527" geneId="Csa.10682"/>
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        <gene id="60" protId="H2YU29" geneId="uncharacterized_H2YU29"/>
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        <gene id="64" protId="H2YP32" geneId="uncharacterized_H2YP32"/>
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        <gene id="76" protId="H2YFJ8" geneId="Csa.6570"/>
        <gene id="80" protId="H2ZJ11" geneId="uncharacterized_H2ZJ11"/>
        <gene id="82" protId="H2YVP9" geneId="uncharacterized_H2YVP9"/>
        <gene id="84" protId="H2YT43" geneId="Csa.9799"/>
        <gene id="86" protId="H2Z1V0" geneId="uncharacterized_H2Z1V0"/>
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        <gene id="94" protId="H2ZGL1" geneId="uncharacterized_H2ZGL1"/>
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    <notes>
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