<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="443" inparalogs="1366"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ailuropoda melanoleuca " NCBITaxId="9646">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="2" protId="G1L4R0" geneId="LOC100465885"/>
        <gene id="5" protId="G1L359" geneId="MTR"/>
        <gene id="7" protId="G1MBI5" geneId="LOC100472555"/>
        <gene id="9" protId="D2H1P9" geneId="MUT"/>
        <gene id="11" protId="G1MB13" geneId="ACO2"/>
        <gene id="13" protId="G1MDU1" geneId="HSPA9"/>
        <gene id="15" protId="G1L707" geneId="PFAS"/>
        <gene id="17" protId="G1LI62" geneId="PCCB"/>
        <gene id="19" protId="G1MCA9" geneId="GUF1"/>
        <gene id="21" protId="D2H363" geneId="ATP5B"/>
        <gene id="23" protId="G1M4C5" geneId="IARS"/>
        <gene id="25" protId="G1LRB0" geneId="AHCY"/>
        <gene id="27" protId="G1LIQ4" geneId="uncharacterized_G1LIQ4"/>
        <gene id="29" protId="G1LE07" geneId="AARS"/>
        <gene id="30" protId="G1LZ61" geneId="AARS2"/>
        <gene id="32" protId="G1M1T5" geneId="ATP5A1"/>
        <gene id="34" protId="G1LIR3" geneId="VARS"/>
        <gene id="35" protId="G1M340" geneId="VARS2"/>
        <gene id="37" protId="G1M2A9" geneId="AFG3L2"/>
        <gene id="39" protId="G1LXB3" geneId="GBE1"/>
        <gene id="41" protId="G1M4M7" geneId="LOC100473626"/>
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        <gene id="45" protId="G1LJK1" geneId="PGD"/>
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        <gene id="50" protId="D2HYW7" geneId="MCCC1"/>
        <gene id="53" protId="G1MAN2" geneId="TUFM"/>
        <gene id="55" protId="G1L1V3" geneId="LOC100484762"/>
        <gene id="56" protId="G1MCQ8" geneId="ATP2B1"/>
        <gene id="57" protId="G1LQL5" geneId="LOC100476768"/>
        <gene id="58" protId="G1MC01" geneId="LOC100472949"/>
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        <gene id="71" protId="G1LWN5" geneId="GMDS"/>
        <gene id="73" protId="D2HXR0" geneId="ACSM3"/>
        <gene id="74" protId="G1LI60" geneId="ACSM4"/>
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        <gene id="82" protId="D2I190" geneId="CTPS1"/>
        <gene id="83" protId="G1LV08" geneId="LOC100467998"/>
        <gene id="85" protId="G1M704" geneId="LOC100480864"/>
        <gene id="86" protId="G1LJF9" geneId="uncharacterized_G1LJF9"/>
        <gene id="87" protId="G1L6X4" geneId="uncharacterized_G1L6X4"/>
        <gene id="88" protId="D2HMP6" geneId="LOC100475419"/>
        <gene id="89" protId="G1L0I3" geneId="GAPDHS"/>
        <gene id="91" protId="D2HJ02" geneId="ENO2"/>
        <gene id="92" protId="D2I1K4" geneId="ENO3"/>
        <gene id="93" protId="G1LB18" geneId="ENO1"/>
        <gene id="95" protId="D2HEW0" geneId="QARS"/>
        <gene id="97" protId="G1LUJ9" geneId="LOC100471831"/>
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        <gene id="102" protId="G1L9P7" geneId="MTHFD1L"/>
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        <gene id="113" protId="G1LZE1" geneId="uncharacterized_G1LZE1"/>
        <gene id="115" protId="G1M128" geneId="LONP1"/>
        <gene id="117" protId="G1M9E2" geneId="XPNPEP2"/>
        <gene id="118" protId="G1LR13" geneId="XPNPEP1"/>
        <gene id="120" protId="G1L600" geneId="MAT2A"/>
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        <gene id="129" protId="G1LK44" geneId="SLC5A1"/>
        <gene id="130" protId="G1MCS8" geneId="uncharacterized_G1MCS8"/>
        <gene id="131" protId="D2I7B9" geneId="SLC5A4"/>
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        <gene id="133" protId="G1LQQ2" geneId="uncharacterized_G1LQQ2"/>
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        <gene id="137" protId="G1LLG5" geneId="GLB1L3"/>
        <gene id="138" protId="G1LLL8" geneId="GLB1L2"/>
        <gene id="139" protId="G1LLF6" geneId="uncharacterized_G1LLF6"/>
        <gene id="142" protId="D2GV72" geneId="LARS2"/>
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        <gene id="152" protId="G1MCA4" geneId="GANC"/>
        <gene id="154" protId="G1LAA4" geneId="LOC100483899"/>
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        <gene id="167" protId="G1LDZ9" geneId="IMPDH1"/>
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        <gene id="171" protId="G1MGY6" geneId="PGK1"/>
        <gene id="173" protId="G1LGG1" geneId="FAP"/>
        <gene id="174" protId="G1LG48" geneId="LOC100466928"/>
        <gene id="175" protId="G1MDL7" geneId="DPP10"/>
        <gene id="176" protId="G1L3C3" geneId="DPP6"/>
        <gene id="178" protId="D2HMA6" geneId="ATP6V1A"/>
        <gene id="180" protId="G1LT95" geneId="GALE"/>
        <gene id="182" protId="G1L5D4" geneId="SUCLG1"/>
        <gene id="184" protId="D2I2H7" geneId="MANEA"/>
        <gene id="185" protId="G1L2W0" geneId="MANEAL"/>
        <gene id="187" protId="G1M611" geneId="FH"/>
        <gene id="189" protId="D2HD11" geneId="ASNS"/>
        <gene id="191" protId="G1L157" geneId="OXSM"/>
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        <gene id="194" protId="D2H1E5" geneId="PGM2L1"/>
        <gene id="196" protId="G1LB93" geneId="BLMH"/>
        <gene id="198" protId="G1LPS1" geneId="POLR2B"/>
        <gene id="199" protId="G1MC66" geneId="POLR3B"/>
        <gene id="201" protId="G1L2L0" geneId="NDUFV1"/>
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        <gene id="204" protId="G1LRH9" geneId="ABCB10"/>
        <gene id="205" protId="G1M923" geneId="ABCB9"/>
        <gene id="207" protId="G1LFG1" geneId="THOP1"/>
        <gene id="208" protId="G1LXM3" geneId="NLN"/>
        <gene id="211" protId="G1LHS7" geneId="PKM"/>
        <gene id="212" protId="G1KZL2" geneId="LOC100474752"/>
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        <gene id="219" protId="G1LJ65" geneId="uncharacterized_G1LJ65"/>
        <gene id="221" protId="G1MBB3" geneId="MSH3"/>
        <gene id="223" protId="G1MCZ1" geneId="POLR2A"/>
        <gene id="224" protId="G1MHI4" geneId="POLR3A"/>
        <gene id="225" protId="G1LGX3" geneId="POLR1A"/>
        <gene id="227" protId="G1L0L9" geneId="LOC100469970"/>
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        <gene id="230" protId="G1M6M6" geneId="ECE1"/>
        <gene id="231" protId="G1M3T9" geneId="LOC100473810"/>
        <gene id="232" protId="G1MDQ4" geneId="LOC100465146"/>
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        <gene id="276" protId="G1MG50" geneId="LOC100475974"/>
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        <gene id="288" protId="G1M499" geneId="uncharacterized_G1M499"/>
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        <gene id="292" protId="G1MHW5" geneId="LOC100472042"/>
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        <gene id="1334" protId="D2GX76" geneId="LOC100463629"/>
        <gene id="1335" protId="D2GZ12" geneId="LOC100477534"/>
        <gene id="1336" protId="D2HYG4" geneId="LOC100479276"/>
        <gene id="1337" protId="D2H6T4" geneId="LOC100469578"/>
        <gene id="1339" protId="G1MF01" geneId="LOC100483725"/>
        <gene id="1340" protId="G1LVW5" geneId="DMC1"/>
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        <gene id="1342" protId="G1MII3" geneId="XRCC3"/>
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        <gene id="1345" protId="D2HMQ1" geneId="NQO1"/>
        <gene id="1346" protId="G1M738" geneId="NQO2"/>
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        <gene id="1360" protId="D2GWC8" geneId="LYPLA2"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="A.melanoleuca" link="http://www.uniprot.org/taxonomy/9646"/>
    </notes>
  </species>
  <species name="Bacteroides thetaiotaomicron " NCBITaxId="226186">
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    <notes>
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