<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="628" inparalogs="1739"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ajellomyces capsulata " NCBITaxId="447093">
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    <notes>
      <additionalInformation abbreviation="A.capsulata" link="http://www.uniprot.org/taxonomy/447093"/>
    </notes>
  </species>
  <species name="Streptomyces coelicolor " NCBITaxId="100226">
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    <notes>
      <additionalInformation abbreviation="S.coelicolor" link="http://www.uniprot.org/taxonomy/100226"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="bootstrap" value="1"/>
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