<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="5843" inparalogs="11728"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ajellomyces capsulata " NCBITaxId="447093">
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    <notes>
      <additionalInformation abbreviation="A.capsulata" link="http://www.uniprot.org/taxonomy/447093"/>
    </notes>
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        <gene id="11442" protId="C0SI27" geneId="PABG_07332"/>
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        <gene id="11591" protId="C0SBV4" geneId="PABG_05159"/>
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        <gene id="11597" protId="C0SAA1" geneId="PABG_04606"/>
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        <gene id="11601" protId="C0S7Z7" geneId="PABG_03947"/>
        <gene id="11603" protId="C0S292" geneId="PABG_01707"/>
        <gene id="11605" protId="C0S822" geneId="PABG_03972"/>
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        <gene id="11658" protId="C0S2U9" geneId="PABG_02013"/>
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        <gene id="11662" protId="C0S0E3" geneId="PABG_01058"/>
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        <gene id="11676" protId="C0SAA3" geneId="PABG_04608"/>
        <gene id="11678" protId="C0SE63" geneId="PABG_05968"/>
        <gene id="11680" protId="C0S4W5" geneId="PABG_02720"/>
        <gene id="11682" protId="C0S534" geneId="PABG_03079"/>
        <gene id="11684" protId="C0SI17" geneId="PABG_07322"/>
        <gene id="11686" protId="C0S4N7" geneId="PABG_02642"/>
        <gene id="11688" protId="C0SI78" geneId="PABG_07457"/>
        <gene id="11691" protId="C0SAP8" geneId="PABG_04753"/>
        <gene id="11693" protId="C0SAC8" geneId="PABG_04633"/>
        <gene id="11695" protId="C0SAS0" geneId="PABG_04775"/>
        <gene id="11697" protId="C0S0Y5" geneId="PABG_01250"/>
        <gene id="11699" protId="C0SF31" geneId="PABG_06286"/>
        <gene id="11701" protId="C0S0L3" geneId="PABG_01128"/>
        <gene id="11704" protId="C0S415" geneId="PABG_02429"/>
        <gene id="11706" protId="C0S790" geneId="PABG_03545"/>
        <gene id="11708" protId="C0SJ09" geneId="PABG_07663"/>
        <gene id="11710" protId="C0S789" geneId="PABG_03544"/>
        <gene id="11712" protId="C0SB10" geneId="PABG_04865"/>
        <gene id="11714" protId="C0SCF0" geneId="PABG_05355"/>
        <gene id="11716" protId="C0RYD5" geneId="PABG_00440"/>
        <gene id="11718" protId="C0RYL4" geneId="PABG_00519"/>
        <gene id="11720" protId="C0S563" geneId="PABG_03108"/>
        <gene id="11722" protId="C0SHX8" geneId="PABG_07283"/>
        <gene id="11728" protId="C0S247" geneId="PABG_01662"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="P.brasiliensis" link="http://www.uniprot.org/taxonomy/482561"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="7098"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
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      <geneRef id="5">
        <score id="inparalog" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="6506"/>
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        <score id="inparalog" value="1"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="5745"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="5317"/>
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        <score id="inparalog" value="1"/>
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      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="7">
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
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        <score id="inparalog" value="1"/>
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    </orthologGroup>
    <orthologGroup id="9">
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      <geneRef id="20">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="22">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="28">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="15">
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      <geneRef id="30">
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        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="16">
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