<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1997" inparalogs="4900"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ajellomyces capsulata " NCBITaxId="447093">
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    <notes>
      <additionalInformation abbreviation="A.capsulata" link="http://www.uniprot.org/taxonomy/447093"/>
    </notes>
  </species>
  <species name="Acyrthosiphon pisum " NCBITaxId="7029">
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        <gene id="4773" protId="J9K9Z6" geneId="uncharacterized_J9K9Z6"/>
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        <gene id="4778" protId="J9L6F6" geneId="uncharacterized_J9L6F6"/>
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        <gene id="4788" protId="J9JKT2" geneId="uncharacterized_J9JKT2"/>
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        <gene id="4792" protId="J9LBD2" geneId="uncharacterized_J9LBD2"/>
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        <gene id="4801" protId="J9JKZ1" geneId="uncharacterized_J9JKZ1"/>
        <gene id="4803" protId="J9K6L5" geneId="uncharacterized_J9K6L5"/>
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        <gene id="4807" protId="J9LFA8" geneId="uncharacterized_J9LFA8"/>
        <gene id="4809" protId="Q1ZZP9" geneId="uncharacterized_Q1ZZP9"/>
        <gene id="4812" protId="J9K566" geneId="uncharacterized_J9K566"/>
        <gene id="4813" protId="J9JNS2" geneId="uncharacterized_J9JNS2"/>
        <gene id="4815" protId="J9JNQ5" geneId="uncharacterized_J9JNQ5"/>
        <gene id="4817" protId="J9K1N4" geneId="uncharacterized_J9K1N4"/>
        <gene id="4819" protId="J9MA49" geneId="uncharacterized_J9MA49"/>
        <gene id="4821" protId="Q201Y5" geneId="uncharacterized_Q201Y5"/>
        <gene id="4823" protId="J9JJ93" geneId="uncharacterized_J9JJ93"/>
        <gene id="4825" protId="J9JV52" geneId="uncharacterized_J9JV52"/>
        <gene id="4827" protId="J9K250" geneId="uncharacterized_J9K250"/>
        <gene id="4829" protId="J9K4H1" geneId="uncharacterized_J9K4H1"/>
        <gene id="4831" protId="C4WSX7" geneId="ACYPI001708"/>
        <gene id="4832" protId="C4WXP9" geneId="ACYPI001868"/>
        <gene id="4834" protId="J9K748" geneId="uncharacterized_J9K748"/>
        <gene id="4835" protId="J9JJN2" geneId="uncharacterized_J9JJN2"/>
        <gene id="4836" protId="J9L3S1" geneId="uncharacterized_J9L3S1"/>
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        <gene id="4844" protId="J9JYJ7" geneId="uncharacterized_J9JYJ7"/>
        <gene id="4846" protId="J9K2K2" geneId="uncharacterized_J9K2K2"/>
        <gene id="4848" protId="J9K9W5" geneId="uncharacterized_J9K9W5"/>
        <gene id="4849" protId="J9JSX0" geneId="uncharacterized_J9JSX0"/>
        <gene id="4851" protId="J9LHC2" geneId="uncharacterized_J9LHC2"/>
        <gene id="4852" protId="J9L4P0" geneId="uncharacterized_J9L4P0"/>
        <gene id="4854" protId="J9JP18" geneId="uncharacterized_J9JP18"/>
        <gene id="4856" protId="J9JV26" geneId="uncharacterized_J9JV26"/>
        <gene id="4858" protId="J9K9E4" geneId="uncharacterized_J9K9E4"/>
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        <gene id="4863" protId="J9JX36" geneId="uncharacterized_J9JX36"/>
        <gene id="4865" protId="J9KIS1" geneId="uncharacterized_J9KIS1"/>
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        <gene id="4868" protId="J9M7W1" geneId="uncharacterized_J9M7W1"/>
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        <gene id="4871" protId="J9KKR4" geneId="uncharacterized_J9KKR4"/>
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        <gene id="4875" protId="J9LQY9" geneId="uncharacterized_J9LQY9"/>
        <gene id="4876" protId="J9KM03" geneId="uncharacterized_J9KM03"/>
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        <gene id="4878" protId="J9LU28" geneId="uncharacterized_J9LU28"/>
        <gene id="4879" protId="J9KWH6" geneId="uncharacterized_J9KWH6"/>
        <gene id="4880" protId="J9KP67" geneId="uncharacterized_J9KP67"/>
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        <gene id="4883" protId="J9MA65" geneId="uncharacterized_J9MA65"/>
        <gene id="4884" protId="J9LVF6" geneId="uncharacterized_J9LVF6"/>
        <gene id="4885" protId="J9L2V0" geneId="uncharacterized_J9L2V0"/>
        <gene id="4886" protId="J9M1J0" geneId="uncharacterized_J9M1J0"/>
        <gene id="4887" protId="J9M5U2" geneId="uncharacterized_J9M5U2"/>
        <gene id="4888" protId="J9LRR1" geneId="uncharacterized_J9LRR1"/>
        <gene id="4889" protId="J9KXC5" geneId="uncharacterized_J9KXC5"/>
        <gene id="4890" protId="J9KPL7" geneId="uncharacterized_J9KPL7"/>
        <gene id="4891" protId="J9LVN4" geneId="uncharacterized_J9LVN4"/>
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        <gene id="4898" protId="J9KYB3" geneId="uncharacterized_J9KYB3"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="A.pisum" link="http://www.uniprot.org/taxonomy/7029"/>
    </notes>
  </species>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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