<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2195" inparalogs="6201"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ajellomyces capsulata " NCBITaxId="447093">
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    <notes>
      <additionalInformation abbreviation="A.capsulata" link="http://www.uniprot.org/taxonomy/447093"/>
    </notes>
  </species>
  <species name="Anolis carolinensis " NCBITaxId="28377">
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        <gene id="5799" protId="H9GGM1" geneId="uncharacterized_H9GGM1"/>
        <gene id="5801" protId="G1KGM1" geneId="SPCS1"/>
        <gene id="5803" protId="G1K9P8" geneId="UBXN4"/>
        <gene id="5805" protId="H9G663" geneId="PSMD8"/>
        <gene id="5807" protId="H9G818" geneId="EXOSC5"/>
        <gene id="5809" protId="H9GDF3" geneId="ATG12"/>
        <gene id="5811" protId="H9G920" geneId="LSMD1"/>
        <gene id="5813" protId="G1KVS3" geneId="LOC100555446"/>
        <gene id="5814" protId="G1KA11" geneId="SNAP25"/>
        <gene id="5815" protId="G1KJC7" geneId="uncharacterized_G1KJC7"/>
        <gene id="5816" protId="H9GK22" geneId="LOC100558388"/>
        <gene id="5818" protId="G1KAM4" geneId="CFL2"/>
        <gene id="5819" protId="H9GEB3" geneId="CFL1"/>
        <gene id="5821" protId="H9GDD7" geneId="PHACTR2"/>
        <gene id="5822" protId="G1KCS1" geneId="LOC100555009"/>
        <gene id="5825" protId="G1KQB8" geneId="TMEM53"/>
        <gene id="5827" protId="H9G833" geneId="RPLP0"/>
        <gene id="5829" protId="H9G4M4" geneId="GET4"/>
        <gene id="5831" protId="H9GNI2" geneId="LOC100555543"/>
        <gene id="5832" protId="H9G939" geneId="LOC100559485"/>
        <gene id="5834" protId="G1KET6" geneId="SPCS3"/>
        <gene id="5836" protId="G1KWA2" geneId="ALG14"/>
        <gene id="5838" protId="H9G5V7" geneId="LOC100567563"/>
        <gene id="5840" protId="H9GDX2" geneId="SLC44A1"/>
        <gene id="5841" protId="G1KDA6" geneId="SLC44A3"/>
        <gene id="5842" protId="G1KRQ5" geneId="SLC44A2"/>
        <gene id="5843" protId="G1KKL2" geneId="SLC44A4"/>
        <gene id="5845" protId="G1KGQ9" geneId="COQ10A"/>
        <gene id="5846" protId="G1KUL5" geneId="LOC100567335"/>
        <gene id="5847" protId="H9GFD0" geneId="COQ10B"/>
        <gene id="5849" protId="H9GN75" geneId="PPP1R16A"/>
        <gene id="5850" protId="G1K9F6" geneId="ANKRD42"/>
        <gene id="5851" protId="G1KZ41" geneId="uncharacterized_G1KZ41"/>
        <gene id="5853" protId="G1KI14" geneId="BCAP31"/>
        <gene id="5854" protId="G1KQS7" geneId="BCAP29"/>
        <gene id="5856" protId="G1K8C7" geneId="CHRAC1"/>
        <gene id="5858" protId="G1KP36" geneId="MLX"/>
        <gene id="5860" protId="G1KRH1" geneId="TMEM69"/>
        <gene id="5862" protId="H9G9Y8" geneId="JMJD4"/>
        <gene id="5864" protId="G1KFZ2" geneId="SAP30BP"/>
        <gene id="5866" protId="H9GNA4" geneId="POLR3K"/>
        <gene id="5868" protId="G1KT36" geneId="R3HDML"/>
        <gene id="5869" protId="G1KVU3" geneId="LOC100554659"/>
        <gene id="5870" protId="G1KNB6" geneId="PI15"/>
        <gene id="5871" protId="G1KE85" geneId="LOC100557540"/>
        <gene id="5872" protId="G1KE38" geneId="CRISP1"/>
        <gene id="5873" protId="G1KM61" geneId="uncharacterized_G1KM61"/>
        <gene id="5874" protId="G1KM71" geneId="LOC100556950"/>
        <gene id="5875" protId="G1KM75" geneId="LOC100564698"/>
        <gene id="5876" protId="G1KM80" geneId="LOC100564498"/>
        <gene id="5877" protId="G1KGZ4" geneId="uncharacterized_G1KGZ4"/>
        <gene id="5878" protId="G1KH00" geneId="uncharacterized_G1KH00"/>
        <gene id="5879" protId="G1KH12" geneId="uncharacterized_G1KH12"/>
        <gene id="5880" protId="G1KSX8" geneId="PI16"/>
        <gene id="5882" protId="G1KCQ6" geneId="GFOD1"/>
        <gene id="5883" protId="H9G4Z5" geneId="GFOD2"/>
        <gene id="5885" protId="G1KVY2" geneId="LOC100564436"/>
        <gene id="5886" protId="H9GT28" geneId="uncharacterized_H9GT28"/>
        <gene id="5888" protId="H9GCJ1" geneId="TBC1D1"/>
        <gene id="5889" protId="G1KA39" geneId="tbc1d4"/>
        <gene id="5891" protId="G1K8Q1" geneId="DPY30"/>
        <gene id="5893" protId="G1KPR7" geneId="NUS1"/>
        <gene id="5895" protId="G1KNY0" geneId="PFDN1"/>
        <gene id="5897" protId="H9G7V2" geneId="UQCRQ"/>
        <gene id="5899" protId="H9GQU2" geneId="SETD4"/>
        <gene id="5901" protId="H9G849" geneId="CCDC97"/>
        <gene id="5903" protId="H9GI81" geneId="PEX14"/>
        <gene id="5905" protId="G1KF17" geneId="ATP5F1"/>
        <gene id="5907" protId="G1KDI7" geneId="MRPS6"/>
        <gene id="5909" protId="G1KTW8" geneId="uncharacterized_G1KTW8"/>
        <gene id="5911" protId="H9GMA1" geneId="LOC100551576"/>
        <gene id="5913" protId="G1KCM1" geneId="TMEM50B"/>
        <gene id="5914" protId="H9GK41" geneId="TMEM50A"/>
        <gene id="5916" protId="H9GA06" geneId="HMGCL"/>
        <gene id="5917" protId="H9GNM2" geneId="HMGCLL1"/>
        <gene id="5919" protId="G1KAV2" geneId="C11orf73"/>
        <gene id="5921" protId="G1KCN1" geneId="CRIPT"/>
        <gene id="5923" protId="H9GH04" geneId="LOC100559095"/>
        <gene id="5925" protId="H9GJS8" geneId="TRAPPC2L"/>
        <gene id="5928" protId="G1KQT8" geneId="LOC100557280"/>
        <gene id="5929" protId="G1K8D1" geneId="PPAP2B"/>
        <gene id="5930" protId="H9GEK0" geneId="PPAP2C"/>
        <gene id="5931" protId="G1KTW2" geneId="LOC100557410"/>
        <gene id="5932" protId="G1KT78" geneId="uncharacterized_G1KT78"/>
        <gene id="5933" protId="G1KCA9" geneId="LOC100567392"/>
        <gene id="5935" protId="G1KEN3" geneId="LOC100567251"/>
        <gene id="5936" protId="G1KL69" geneId="LOC100557823"/>
        <gene id="5937" protId="H9GU14" geneId="uncharacterized_H9GU14"/>
        <gene id="5938" protId="G1KD84" geneId="uncharacterized_G1KD84"/>
        <gene id="5939" protId="G1K9J7" geneId="DNAJB9"/>
        <gene id="5942" protId="H9GLR9" geneId="LOC100552235"/>
        <gene id="5943" protId="H9GDA7" geneId="LOC100554719"/>
        <gene id="5944" protId="H9GKE2" geneId="PLAC8L1"/>
        <gene id="5945" protId="G1KKF2" geneId="PLAC8"/>
        <gene id="5947" protId="G1KG04" geneId="CYB561D2"/>
        <gene id="5949" protId="G1KWS1" geneId="MRPS14"/>
        <gene id="5951" protId="G1KFI8" geneId="CBX1"/>
        <gene id="5952" protId="G1KN19" geneId="CBX3"/>
        <gene id="5953" protId="G1KNP3" geneId="CBX5"/>
        <gene id="5955" protId="G1KK67" geneId="COPS8"/>
        <gene id="5957" protId="H9G413" geneId="GINS4"/>
        <gene id="5959" protId="H9GDW9" geneId="PSMF1"/>
        <gene id="5961" protId="G1KIM7" geneId="TGFBR1"/>
        <gene id="5962" protId="G1KT77" geneId="ACVR1B"/>
        <gene id="5963" protId="G1KP73" geneId="BMPR1B"/>
        <gene id="5964" protId="H9GLF0" geneId="BMPR1A"/>
        <gene id="5965" protId="H9GCW2" geneId="ACVR1"/>
        <gene id="5966" protId="G1KT96" geneId="ACVRL1"/>
        <gene id="5967" protId="G1KJI1" geneId="LOC100556560"/>
        <gene id="5968" protId="G1KPQ7" geneId="TGFBR2"/>
        <gene id="5969" protId="H9G7M4" geneId="ACVR2A"/>
        <gene id="5970" protId="H9GET5" geneId="ACVR2B"/>
        <gene id="5971" protId="G1K8P3" geneId="AMHR2"/>
        <gene id="5973" protId="H9GLZ7" geneId="LOC100558749"/>
        <gene id="5974" protId="H9GSH2" geneId="ARPC5"/>
        <gene id="5975" protId="H9GE19" geneId="ARPC5L"/>
        <gene id="5977" protId="G1KB33" geneId="C5orf63"/>
        <gene id="5979" protId="H9G649" geneId="NOA1"/>
        <gene id="5981" protId="G1KWP7" geneId="uncharacterized_G1KWP7"/>
        <gene id="5982" protId="G1KYY6" geneId="uncharacterized_G1KYY6"/>
        <gene id="5983" protId="H9GTG3" geneId="uncharacterized_H9GTG3"/>
        <gene id="5984" protId="H9GUY8" geneId="uncharacterized_H9GUY8"/>
        <gene id="5985" protId="G1KUZ6" geneId="uncharacterized_G1KUZ6"/>
        <gene id="5986" protId="G1KYL6" geneId="uncharacterized_G1KYL6"/>
        <gene id="5987" protId="H9GU89" geneId="uncharacterized_H9GU89"/>
        <gene id="5988" protId="G1KW66" geneId="uncharacterized_G1KW66"/>
        <gene id="5989" protId="G1KVL6" geneId="uncharacterized_G1KVL6"/>
        <gene id="5990" protId="H9GVH0" geneId="uncharacterized_H9GVH0"/>
        <gene id="5991" protId="L7MZX8" geneId="uncharacterized_L7MZX8"/>
        <gene id="5992" protId="H9GJZ7" geneId="uncharacterized_H9GJZ7"/>
        <gene id="5993" protId="H9GSK0" geneId="uncharacterized_H9GSK0"/>
        <gene id="5994" protId="G1KVZ4" geneId="uncharacterized_G1KVZ4"/>
        <gene id="5995" protId="G1KVX9" geneId="uncharacterized_G1KVX9"/>
        <gene id="5996" protId="G1KWC9" geneId="uncharacterized_G1KWC9"/>
        <gene id="5997" protId="G1KYS3" geneId="uncharacterized_G1KYS3"/>
        <gene id="5998" protId="G1KV45" geneId="uncharacterized_G1KV45"/>
        <gene id="5999" protId="G1KZ63" geneId="uncharacterized_G1KZ63"/>
        <gene id="6000" protId="H9GI52" geneId="uncharacterized_H9GI52"/>
        <gene id="6001" protId="H9GQQ3" geneId="uncharacterized_H9GQQ3"/>
        <gene id="6002" protId="G1KX93" geneId="uncharacterized_G1KX93"/>
        <gene id="6003" protId="H9GUS2" geneId="uncharacterized_H9GUS2"/>
        <gene id="6004" protId="H9GV89" geneId="uncharacterized_H9GV89"/>
        <gene id="6005" protId="G1KVR4" geneId="uncharacterized_G1KVR4"/>
        <gene id="6006" protId="G1KZ79" geneId="uncharacterized_G1KZ79"/>
        <gene id="6007" protId="G1KW68" geneId="uncharacterized_G1KW68"/>
        <gene id="6008" protId="G1KXV3" geneId="uncharacterized_G1KXV3"/>
        <gene id="6009" protId="G1KWA1" geneId="uncharacterized_G1KWA1"/>
        <gene id="6010" protId="H9GST3" geneId="uncharacterized_H9GST3"/>
        <gene id="6011" protId="G1KVV9" geneId="uncharacterized_G1KVV9"/>
        <gene id="6012" protId="H9GSE9" geneId="uncharacterized_H9GSE9"/>
        <gene id="6013" protId="G1KW49" geneId="uncharacterized_G1KW49"/>
        <gene id="6014" protId="H9GTQ8" geneId="uncharacterized_H9GTQ8"/>
        <gene id="6015" protId="G1KXQ6" geneId="uncharacterized_G1KXQ6"/>
        <gene id="6016" protId="G1KY85" geneId="uncharacterized_G1KY85"/>
        <gene id="6017" protId="G1KZA2" geneId="uncharacterized_G1KZA2"/>
        <gene id="6018" protId="H9GUX2" geneId="uncharacterized_H9GUX2"/>
        <gene id="6019" protId="G1KXG2" geneId="uncharacterized_G1KXG2"/>
        <gene id="6020" protId="G1KYQ2" geneId="uncharacterized_G1KYQ2"/>
        <gene id="6021" protId="L7MZS5" geneId="uncharacterized_L7MZS5"/>
        <gene id="6022" protId="G1KYC4" geneId="uncharacterized_G1KYC4"/>
        <gene id="6023" protId="G1KXX4" geneId="uncharacterized_G1KXX4"/>
        <gene id="6024" protId="H9GRZ3" geneId="uncharacterized_H9GRZ3"/>
        <gene id="6025" protId="H9GVA6" geneId="uncharacterized_H9GVA6"/>
        <gene id="6026" protId="G1KUT4" geneId="uncharacterized_G1KUT4"/>
        <gene id="6027" protId="G1KE15" geneId="uncharacterized_G1KE15"/>
        <gene id="6028" protId="G1KZD4" geneId="uncharacterized_G1KZD4"/>
        <gene id="6029" protId="G1KY18" geneId="uncharacterized_G1KY18"/>
        <gene id="6030" protId="G1KWI9" geneId="uncharacterized_G1KWI9"/>
        <gene id="6031" protId="G1KVJ1" geneId="uncharacterized_G1KVJ1"/>
        <gene id="6032" protId="G1KXH5" geneId="uncharacterized_G1KXH5"/>
        <gene id="6033" protId="G1KVF6" geneId="uncharacterized_G1KVF6"/>
        <gene id="6034" protId="H9GQV2" geneId="uncharacterized_H9GQV2"/>
        <gene id="6035" protId="G1KZ65" geneId="uncharacterized_G1KZ65"/>
        <gene id="6036" protId="G1KUX3" geneId="uncharacterized_G1KUX3"/>
        <gene id="6037" protId="G1KVN5" geneId="uncharacterized_G1KVN5"/>
        <gene id="6038" protId="G1KY79" geneId="uncharacterized_G1KY79"/>
        <gene id="6039" protId="H9GTE7" geneId="uncharacterized_H9GTE7"/>
        <gene id="6041" protId="G1KI72" geneId="IFRD2"/>
        <gene id="6042" protId="G1KG48" geneId="IFRD1"/>
        <gene id="6044" protId="G1KI32" geneId="CDC37"/>
        <gene id="6045" protId="G1KC11" geneId="CDC37L1"/>
        <gene id="6047" protId="G1KUB7" geneId="STX8"/>
        <gene id="6049" protId="H9GP96" geneId="PARK7"/>
        <gene id="6051" protId="H9GKK8" geneId="COQ9"/>
        <gene id="6074" protId="G1KE80" geneId="SLC17A9"/>
        <gene id="6075" protId="H9GP75" geneId="SLC17A7"/>
        <gene id="6076" protId="G1KQR9" geneId="SLC17A6"/>
        <gene id="6077" protId="G1KME0" geneId="SLC17A8"/>
        <gene id="6078" protId="H9G9C4" geneId="SLC17A5"/>
        <gene id="6080" protId="G1KC55" geneId="ZIC5"/>
        <gene id="6081" protId="G1KFX6" geneId="ZIC1"/>
        <gene id="6082" protId="G1KC51" geneId="ZIC2"/>
        <gene id="6083" protId="G1KLA1" geneId="LOC100567771"/>
        <gene id="6084" protId="H9GJW3" geneId="LOC100568192"/>
        <gene id="6085" protId="L7MZI7" geneId="GFI1B"/>
        <gene id="6086" protId="H9GW08" geneId="uncharacterized_H9GW08"/>
        <gene id="6087" protId="H9GTI9" geneId="uncharacterized_H9GTI9"/>
        <gene id="6088" protId="H9GDW8" geneId="LOC100561790"/>
        <gene id="6089" protId="G1KCV3" geneId="GFI1"/>
        <gene id="6090" protId="H9G720" geneId="KLF13"/>
        <gene id="6091" protId="H9GRH0" geneId="uncharacterized_H9GRH0"/>
        <gene id="6092" protId="H9GN31" geneId="OSR2"/>
        <gene id="6095" protId="H9GJT1" geneId="LOC100556942"/>
        <gene id="6096" protId="H9GF27" geneId="LOC100557138"/>
        <gene id="6098" protId="H9G959" geneId="RAPH1"/>
        <gene id="6099" protId="G1KHG6" geneId="APBB1IP"/>
        <gene id="6101" protId="G1KIY9" geneId="ANKRA2"/>
        <gene id="6103" protId="H9GCN3" geneId="NUDT19"/>
        <gene id="6105" protId="H9GM19" geneId="MINPP1"/>
        <gene id="6107" protId="H9GGT5" geneId="MRPL49"/>
        <gene id="6109" protId="G1KFW5" geneId="LOC100558213"/>
        <gene id="6111" protId="G1KHZ4" geneId="ENOSF1"/>
        <gene id="6113" protId="H9G8F6" geneId="MSS51"/>
        <gene id="6115" protId="G1KR03" geneId="EMC7"/>
        <gene id="6117" protId="H9GIW8" geneId="LOC100563749"/>
        <gene id="6118" protId="H9GAZ6" geneId="CELF6"/>
        <gene id="6119" protId="H9GNS6" geneId="CELF5"/>
        <gene id="6120" protId="G1KAD8" geneId="CELF1"/>
        <gene id="6121" protId="G1KH06" geneId="CELF2"/>
        <gene id="6123" protId="H9G5U9" geneId="PGAM2"/>
        <gene id="6124" protId="H9G5Z0" geneId="LOC100559697"/>
        <gene id="6125" protId="G1KLQ6" geneId="BPGM"/>
        <gene id="6127" protId="H9GB82" geneId="LOC100555372"/>
        <gene id="6128" protId="H9GBI0" geneId="HIGD1A"/>
        <gene id="6130" protId="G1KP46" geneId="PSMC3IP"/>
        <gene id="6132" protId="H9G6R7" geneId="LOC100556334"/>
        <gene id="6134" protId="H9GCQ0" geneId="ANKRD27"/>
        <gene id="6136" protId="H9GCJ4" geneId="SWI5"/>
        <gene id="6138" protId="H9GHD6" geneId="GTF2E1"/>
        <gene id="6140" protId="G1KVJ3" geneId="uncharacterized_G1KVJ3"/>
        <gene id="6141" protId="G1KYD4" geneId="GYG1"/>
        <gene id="6143" protId="G1K8Y2" geneId="UROS"/>
        <gene id="6145" protId="H9GBJ9" geneId="MTX2"/>
        <gene id="6146" protId="H9G653" geneId="MTX1"/>
        <gene id="6147" protId="G1KSV1" geneId="MTX3"/>
        <gene id="6149" protId="G1KM45" geneId="ACYP2"/>
        <gene id="6150" protId="G1KT64" geneId="ACYP1"/>
        <gene id="6152" protId="H9G524" geneId="PCBD2"/>
        <gene id="6153" protId="G1KI78" geneId="PCBD1"/>
        <gene id="6155" protId="G1K929" geneId="COA6"/>
        <gene id="6157" protId="G1KSY1" geneId="TRIM55"/>
        <gene id="6158" protId="G1KFS8" geneId="LOC100557756"/>
        <gene id="6159" protId="H9GPP8" geneId="TRIM63"/>
        <gene id="6160" protId="H9GDA3" geneId="TRIM36"/>
        <gene id="6161" protId="G1K9B6" geneId="MID1"/>
        <gene id="6162" protId="G1KAM1" geneId="TRIM67"/>
        <gene id="6163" protId="L7N007" geneId="uncharacterized_L7N007"/>
        <gene id="6164" protId="G1KM33" geneId="uncharacterized_G1KM33"/>
        <gene id="6165" protId="G1KHY6" geneId="LOC100562277"/>
        <gene id="6166" protId="G1KG92" geneId="TRIM59"/>
        <gene id="6167" protId="G1KV81" geneId="uncharacterized_G1KV81"/>
        <gene id="6169" protId="G1KT23" geneId="C12orf44"/>
        <gene id="6172" protId="H9GA11" geneId="ACPT"/>
        <gene id="6173" protId="G1KBI7" geneId="ACP2"/>
        <gene id="6174" protId="G1K9C3" geneId="ACPP"/>
        <gene id="6176" protId="G1KU27" geneId="BET1L"/>
        <gene id="6177" protId="G1KNI2" geneId="BET1"/>
        <gene id="6179" protId="G1KH32" geneId="USP6NL"/>
        <gene id="6181" protId="G1KER2" geneId="CCDC115"/>
        <gene id="6183" protId="H9GP65" geneId="MEAF6"/>
        <gene id="6185" protId="H9GBV6" geneId="NAA50"/>
        <gene id="6187" protId="G1KX03" geneId="FOXB2"/>
        <gene id="6188" protId="G1K998" geneId="FOXA1"/>
        <gene id="6189" protId="H9GW25" geneId="uncharacterized_H9GW25"/>
        <gene id="6190" protId="G1KHB1" geneId="FOXD3"/>
        <gene id="6191" protId="H9GFB3" geneId="FOXE3"/>
        <gene id="6192" protId="H9G9K7" geneId="LOC100560010"/>
        <gene id="6193" protId="H9GI20" geneId="FOXN4"/>
        <gene id="6195" protId="G1KVM4" geneId="ATF1"/>
        <gene id="6196" protId="G1K907" geneId="CREM"/>
        <gene id="6197" protId="H9GFI2" geneId="CREB1"/>
        <gene id="6199" protId="G1K947" geneId="PHYH"/>
        <gene id="6201" protId="G1KD99" geneId="GTF2H5"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="A.carolinensis" link="http://www.uniprot.org/taxonomy/28377"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="4283"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3034"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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